Non-Coding RNA Search

Ss1.1-rmed03c_j15.5

Sequence:


               
               CTGCATTCGTGTCCCTGTGGAAAGACCTTTGTCAACCTTACCAAGTTCCTTTATCACCGG
CGTACCCATGGGGTTGGGGGTGTCCCTCTGCCCACAACACCAGTCCCACCAGAGGAGCCT
GTCGTCGGCTTCCCAGAGCCAGCTCCGGCAGAGACTGGAGAGCCAGAGGCCCCAGAGCCC
CCTGCTGCTGAGGAGAGCTCGGCAGGGCCCGCCACCCCAGGCACCTACCGCTGCCTCCTG
TGCAGCCGTGAATTTGGCAAGGCGTTGCAGCTGACCCGGCACCAGCGTTTTGTGCACCGA
CTGGAACGCCGCCATAAGTGTGGCATTTGTGGCAAGATGTTCAAGAAGAAGTCTCATGTG
CGGAACCACCTGCGCACGCACACAGGTGAACGGCCCTTCCCCTGCCCAGACTGCTCCAAG
CCCTTCAACTCACCTGCCAACCTGGCCCGCCACCGGCTCACGCACACAGGGGAGCGGCCC
TACCGGTGTGGGGACTGCGGCAAGGCCTTCACACAGAGCTCCACGCTGAGGCAGCACCGC
CTGGTGCACGCCCAGCACTTCCCCTACCGCTGCCAGGAGTGCGGCGTGCGTTTTCACCGC
CCCTACCGCCTACTCATGCACCGCTATCACCACACGGGCGAGTACCCCTACAAGTGTCGC
GAGTGCCCCCGCTCCTTCTTGCTGCGCCGGCTGCTGGAGGTGCACCAGCTCGTGGCCCAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGCATTCGTGTCCCTGTGGAAAGACCTTTGTCAACCTTACCAAGTTCCTTTATCACCGG
CGTACCCATGGGGTTGGGGGTGTCCCTCTGCCCACAACACCAGTCCCACCAGAGGAGCCT
GTCGTCGGCTTCCCAGAGCCAGCTCCGGCAGAGACTGGAGAGCCAGAGGCCCCAGAGCCC
CCTGCTGCTGAGGAGAGCTCGGCAGGGCCCGCCACCCCAGGCACCTACCGCTGCCTCCTG
TGCAGCCGTGAATTTGGCAAGGCGTTGCAGCTGACCCGGCACCAGCGTTTTGTGCACCGA
CTGGAACGCCGCCATAAGTGTGGCATTTGTGGCAAGATGTTCAAGAAGAAGTCTCATGTG
CGGAACCACCTGCGCACGCACACAGGTGAACGGCCCTTCCCCTGCCCAGACTGCTCCAAG
CCCTTCAACTCACCTGCCAACCTGGCCCGCCACCGGCTCACGCACACAGGGGAGCGGCCC
TACCGGTGTGGGGACTGCGGCAAGGCCTTCACACAGAGCTCCACGCTGAGGCAGCACCGC
CTGGTGCACGCCCAGCACTTCCCCTACCGCTGCCAGGAGTGCGGCGTGCGTTTTCACCGC
CCCTACCGCCTACTCATGCACCGCTATCACCACACGGGCGAGTACCCCTACAAGTGTCGC
GAGTGCCCCCGCTCCTTCTTGCTGCGCCGGCTGCTGGAGGTGCACCAGCTCGTGGCCCAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               120-239, - strand, RNAz p=0.506857

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-239, - strand, RNAz p=0.506857

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               18-238, - strand, RNAmicro p=0.987107

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               18-238, - strand, RNAmicro p=0.987107

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-719, gnl|bosTau2|chr18 (44817525-44818243)
               

               
               1-719, gnl|Hg17|chr19 (47275769-47276487)
               

               
               1-719, gnl|Mm7|chr7 (21870221-21870939)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-719, gnl|bosTau2|chr18 (44817525-44818243)
               

               
               1-719, gnl|Hg17|chr19 (47275769-47276487)
               

               
               1-719, gnl|Mm7|chr7 (21870221-21870939)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               med (0.116252)
               

               
               cty (0.10408)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               med (0.116252)
               

               
               cty (0.10408)

	1-719, gnl\|bosTau2\|chr18 (44817525-44818243)
	1-719, gnl\|Hg17\|chr19 (47275769-47276487)
	1-719, gnl\|Mm7\|chr7 (21870221-21870939)