Non-Coding RNA Search

Ss1.1-rmed03c_k15.5

Sequence:


               
               AGAGAGAGACTGTGTTTGTGTGTGCCTCGTGTAACCAGACCTTGAGCAAGTGAGAAGAGG
GGTCAGGGTCCGAGCGGGCGCCTGTCCCTGGGGCCAGCAGTAGACCCCACTCTCCCCCTG
CCCCTTAGCCCCACGCGGTGTGTGCTGGGCACATGTGGCCCGAATGCTAGGTAGGCTTCC
CCTTCCCGCCCTCGCTGTCTCCAGCCGGGGTCTGGAGCGGGTCTCCACTCCCGCGGGTGG
CTGGGAACGGTTGCTCTCAAATCATGTTTGCCCTGCTCTGCCCTGGGCTGTTAGTGGGTC
AGGGCTGGGCAGGGAATGTAAGCTAGAGGGCGGCAGGGAGCCAGGCCCAGTCTCCACGGG
AATGGTGGCGTCTCACAGGCCTGGGAGCTCTGGGAGACCAGAGGTCAGCGATTGGGAAAA
GAGGCTCTCCTCCCGCTGGGTGCTGGGCCAGCCCCTTGCCCTTTGAGAGCCAATTCAAAG
AAGGAGTTGCGCCCAGCCCCACATGTGCTCTTTGCGTGTCCCTCCAGGCATCAGGTTCTC
ATCATTTCCCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAGAGAGACTGTGTTTGTGTGTGCCTCGTGTAACCAGACCTTGAGCAAGTGAGAAGAGG
GGTCAGGGTCCGAGCGGGCGCCTGTCCCTGGGGCCAGCAGTAGACCCCACTCTCCCCCTG
CCCCTTAGCCCCACGCGGTGTGTGCTGGGCACATGTGGCCCGAATGCTAGGTAGGCTTCC
CCTTCCCGCCCTCGCTGTCTCCAGCCGGGGTCTGGAGCGGGTCTCCACTCCCGCGGGTGG
CTGGGAACGGTTGCTCTCAAATCATGTTTGCCCTGCTCTGCCCTGGGCTGTTAGTGGGTC
AGGGCTGGGCAGGGAATGTAAGCTAGAGGGCGGCAGGGAGCCAGGCCCAGTCTCCACGGG
AATGGTGGCGTCTCACAGGCCTGGGAGCTCTGGGAGACCAGAGGTCAGCGATTGGGAAAA
GAGGCTCTCCTCCCGCTGGGTGCTGGGCCAGCCCCTTGCCCTTTGAGAGCCAATTCAAAG
AAGGAGTTGCGCCCAGCCCCACATGTGCTCTTTGCGTGTCCCTCCAGGCATCAGGTTCTC
ATCATTTCCCCA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               263-364, + strand, RNAz p=0.955754

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               263-364, + strand, RNAz p=0.955754

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AL834235, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AL834235, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-551, gnl|bosTau2|chr26 (10387625-10387087)
               

               
               1-551, gnl|Hg17|chr10 (99508995-99509578)
               

               
               1-551, gnl|Mm7|chr19 (42084194-42084697)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-551, gnl|bosTau2|chr26 (10387625-10387087)
               

               
               1-551, gnl|Hg17|chr10 (99508995-99509578)
               

               
               1-551, gnl|Mm7|chr19 (42084194-42084697)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               ece (0.229305)
               

               
               hyp (0.142837)
               

               
               med (0.116252)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               hyp (0.142837)
               

               
               med (0.116252)

	1-551, gnl\|bosTau2\|chr26 (10387625-10387087)
	1-551, gnl\|Hg17\|chr10 (99508995-99509578)
	1-551, gnl\|Mm7\|chr19 (42084194-42084697)