Ss1.1-rmed03c_n19.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCTGCAGCAATGCAAGTTCACAGACGTGACCCTGAGCCCCTGGAGTGGGGACAGCAAGTG CCACCAGCGCCGAGTGCTGACCTACACCATCCCCATCAACAACCCTCTGGGACCCAAGAG CGCCTCTGTGGTGGAGACACAGACGCTGTTCCGGCGCGGCCCTCAGGCGGGCGGGTGTGT GGTGGACTCGGAGGTGCTGACGCAGGGCATCCCCTACCAGGACTACTTCTACACTGCCCA CCGCTACTGCATCCTGGGCCTGGCCCGGAACAAGGCCCGGCTCCGAGTGTCCTCCGAGAT CCGCTACCGGAAGCAGCCCTGGAGCCTCGTGAAGTCTCTCATCGAGAAGAACTCGTGGAG CGGCATCGAGGATTACTTCCACCACCTGGAGCGAGAGCTCGCCAAGGCCGAGAAGCTCTC TCTGGAGGAGGGCGGGAAGGATGCCCGGGGCTTGCTGTCTGGCCTGCGCAGGCGGAAGCG GCCCCTGAGCTGGAGGGGTCACGGTGATGGGCCCCAGCACCCGGACCCTGACCCCTGTAC CCGGCCTGGCATGCACACCTCAGGCTCCCTCAGCTCTCGCTTCTCGGAACCGTCCATGGA CCAGGGGCCTGGGGCAGGCATCCCCAGCGCCCTGGTTCTCATCAGCATCGTGATCTGTGT GAGCCTCATTGTCCTCATCGCCCTCAACGTCCTCCTCTTTTACCGCCTCTGGTCCCTGGA GAGGACGGCCCACACTTTCGAGTCCTGGCATAGTCTGGCCCTGGCCAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCTGCAGCAATGCAAGTTCACAGACGTGACCCTGAGCCCCTGGAGTGGGGACAGCAAGTG CCACCAGCGCCGAGTGCTGACCTACACCATCCCCATCAACAACCCTCTGGGACCCAAGAG CGCCTCTGTGGTGGAGACACAGACGCTGTTCCGGCGCGGCCCTCAGGCGGGCGGGTGTGT GGTGGACTCGGAGGTGCTGACGCAGGGCATCCCCTACCAGGACTACTTCTACACTGCCCA CCGCTACTGCATCCTGGGCCTGGCCCGGAACAAGGCCCGGCTCCGAGTGTCCTCCGAGAT CCGCTACCGGAAGCAGCCCTGGAGCCTCGTGAAGTCTCTCATCGAGAAGAACTCGTGGAG CGGCATCGAGGATTACTTCCACCACCTGGAGCGAGAGCTCGCCAAGGCCGAGAAGCTCTC TCTGGAGGAGGGCGGGAAGGATGCCCGGGGCTTGCTGTCTGGCCTGCGCAGGCGGAAGCG GCCCCTGAGCTGGAGGGGTCACGGTGATGGGCCCCAGCACCCGGACCCTGACCCCTGTAC CCGGCCTGGCATGCACACCTCAGGCTCCCTCAGCTCTCGCTTCTCGGAACCGTCCATGGA CCAGGGGCCTGGGGCAGGCATCCCCAGCGCCCTGGTTCTCATCAGCATCGTGATCTGTGT GAGCCTCATTGTCCTCATCGCCCTCAACGTCCTCCTCTTTTACCGCCTCTGGTCCCTGGA GAGGACGGCCCACACTTTCGAGTCCTGGCATAGTCTGGCCCTGGCCAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
| 140-285, gnl|bosTau2|chr18 (40010615-40010470) | |
| 140-285, gnl|canFam2|chr1 (120427822-120427663) | |
| 140-285, gnl|danRer3|chr16 (37818907-37819060) | |
| 140-285, gnl|dasNov1|scaffold_221369 (341-499) | |
| 140-285, gnl|echTel1|scaffold_305552 (1372-1213) | |
| 140-285, gnl|fr1|chrUn (246227691-246227843) | |
| 140-285, gnl|hg17|chr19 (40202127-40202286) | |
| 140-285, gnl|Hg17|chr19 (40202132-40202277) | |
| 140-285, gnl|loxAfr1|scaffold_2885 (118707-118558) | |
| 140-285, gnl|mm7|chr7 (28077940-28077784) | |
| 140-285, gnl|Mm7|chr7 (28077932-28077787) | |
| 140-285, gnl|monDom2|scaffold_139 (1343191-1343354) | |
| 140-285, gnl|oryCun1|scaffold_201158 (45766-45606) | |
| 140-285, gnl|panTro1|chr20 (36787259-36787418) | |
| 140-285, gnl|rheMac2|chr19 (41509933-41510092) | |
| 140-285, gnl|rn3|chr1 (86259840-86259684) | |
| 140-285, gnl|tetNig1|chrUn_random (13653603-13653454) | |
| 140-285, gnl|xenTro1|scaffold_733 (170579-170422) | |
| 389-564, gnl|bosTau2|chr18 (40009727-40009552) | |
| 389-564, gnl|Hg17|chr19 (40204434-40204609) | |
| 389-564, gnl|Mm7|chr7 (28076522-28076347) | |
| 662-768, gnl|bosTau2|chr18 (40008095-40007989) | |
| 662-768, gnl|canFam2|chr1 (120425653-120425514) | |
| 662-768, gnl|danRer3|chr16 (37827109-37827224) | |
| 662-768, gnl|dasNov1|scaffold_221369 (3582-3720) | |
| 662-768, gnl|echTel1|scaffold_295679 (5454-5315) | |
| 662-768, gnl|fr1|chrUn (246231214-246231329) | |
| 662-768, gnl|hg17|chr19 (40205962-40206101) | |
| 662-768, gnl|Hg17|chr19 (40205978-40206084) | |
| 662-768, gnl|loxAfr1|scaffold_144552 (764-903) | |
| 662-768, gnl|mm7|chr7 (28075074-28074934) | |
| 662-768, gnl|Mm7|chr7 (28075057-28074951) | |
| 662-768, gnl|monDom2|scaffold_139 (1347620-1347762) | |
| 662-768, gnl|oryCun1|scaffold_172342 (311-451) | |
| 662-768, gnl|panTro1|chr20 (36791092-36791231) | |
| 662-768, gnl|rheMac2|chr19 (41513611-41513750) | |
| 662-768, gnl|rn3|chr1 (86256827-86256687) | |
| 662-768, gnl|tetNig1|chrUn_random (13651411-13651285) | |
| 662-768, gnl|xenTro1|scaffold_733 (167268-167111) |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 140-285, gnl|bosTau2|chr18 (40010615-40010470) | |
| 140-285, gnl|canFam2|chr1 (120427822-120427663) | |
| 140-285, gnl|danRer3|chr16 (37818907-37819060) | |
| 140-285, gnl|dasNov1|scaffold_221369 (341-499) | |
| 140-285, gnl|echTel1|scaffold_305552 (1372-1213) | |
| 140-285, gnl|fr1|chrUn (246227691-246227843) | |
| 140-285, gnl|hg17|chr19 (40202127-40202286) | |
| 140-285, gnl|Hg17|chr19 (40202132-40202277) | |
| 140-285, gnl|loxAfr1|scaffold_2885 (118707-118558) | |
| 140-285, gnl|mm7|chr7 (28077940-28077784) | |
| 140-285, gnl|Mm7|chr7 (28077932-28077787) | |
| 140-285, gnl|monDom2|scaffold_139 (1343191-1343354) | |
| 140-285, gnl|oryCun1|scaffold_201158 (45766-45606) | |
| 140-285, gnl|panTro1|chr20 (36787259-36787418) | |
| 140-285, gnl|rheMac2|chr19 (41509933-41510092) | |
| 140-285, gnl|rn3|chr1 (86259840-86259684) | |
| 140-285, gnl|tetNig1|chrUn_random (13653603-13653454) | |
| 140-285, gnl|xenTro1|scaffold_733 (170579-170422) | |
| 389-564, gnl|bosTau2|chr18 (40009727-40009552) | |
| 389-564, gnl|Hg17|chr19 (40204434-40204609) | |
| 389-564, gnl|Mm7|chr7 (28076522-28076347) | |
| 662-768, gnl|bosTau2|chr18 (40008095-40007989) | |
| 662-768, gnl|canFam2|chr1 (120425653-120425514) | |
| 662-768, gnl|danRer3|chr16 (37827109-37827224) | |
| 662-768, gnl|dasNov1|scaffold_221369 (3582-3720) | |
| 662-768, gnl|echTel1|scaffold_295679 (5454-5315) | |
| 662-768, gnl|fr1|chrUn (246231214-246231329) | |
| 662-768, gnl|hg17|chr19 (40205962-40206101) | |
| 662-768, gnl|Hg17|chr19 (40205978-40206084) | |
| 662-768, gnl|loxAfr1|scaffold_144552 (764-903) | |
| 662-768, gnl|mm7|chr7 (28075074-28074934) | |
| 662-768, gnl|Mm7|chr7 (28075057-28074951) | |
| 662-768, gnl|monDom2|scaffold_139 (1347620-1347762) | |
| 662-768, gnl|oryCun1|scaffold_172342 (311-451) | |
| 662-768, gnl|panTro1|chr20 (36791092-36791231) | |
| 662-768, gnl|rheMac2|chr19 (41513611-41513750) | |
| 662-768, gnl|rn3|chr1 (86256827-86256687) | |
| 662-768, gnl|tetNig1|chrUn_random (13651411-13651285) | |
| 662-768, gnl|xenTro1|scaffold_733 (167268-167111) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ebs (0.118301) | |
| med (0.116252) | |
| ecc (0.115035) |