Ss1.1-rmed05c_c12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGGAGAAATGATCTAGAGCTGTATATCAGTGTAGCAAAATGCCTTTCCGAAATGACAGAT GATGAAGCCAATCGAGTTGCCCAGATTACCAAGAGTAGCGTAGAAAAAGCTGCCTTTGTC AGACTGTACTTGGTCTCTCAAGGACGATTCCCCTTGATGGGCTTGACTGATGTGCTCAGC GTTGCTGTCCAGCACCATGAGAAAGACACACTGGGCTGGATGATACTGCACAGCTTATAT CAGGCCCGCATTGTGAGCCACGCCAACACCGGGGTTTTGAAGAGAATGGAGTGGCTCTTG GAACTGATGGGTTATATCAGAAATGTTGCTTACCAGTCAACGTCTGTTCAGAACAAGGCC CTTGATGAGGCTTTGGACTTCTTGTTGCTGATATTTGCAACCGCAGTGGTTGCATGGGCA GATCACGCTGCTCCTCTCCTCCTCGGCCTCAGTGCCAGTTGGTTGCCATGGCATCAGGAA AATGGCCCAGCTGGGCCAGCATCAAACTTCCTTGGCAGGAGTCCATTGCACAGGGTCACT CTGCAGGAGGCTCTCACTCTCCTTCCCAGTAGCATGCCTCTTCTGCTTCAGAAAGAGCCA TGGAAGGAGCAGACCCAGAAGTTCATTGACTGGCTATTCAGCATCATGGAAAGCCCTAAA GAAGGCCTCTCAGCAAAATCCAGGGATCTTTTAAAAGCCACCCTGCTGTCCTTGAGAGTT CTCCCAGAGTTTAAGAAGAAAGCCGTATGGACCAGAGCATATGGTTGGTGAACAGTTTTT GCGGTAACCAGCAACATTCTCAGCTGAATGAGGAAAACCATGCAGACAGGAGGAATTTTT CAGAATTAGTGTCTGGGATTACTGAGACATGATGCAGAGGGCTGAGGGTCATGAAAGGGT GGCTGCATAACTGACAGCTTGAACCATGCACGCCAGGAGACGGAAGGGCTATTGCTTCGG TATCCAGGGCAGTTGAGACTGACACAAGAACTTGAATTTTCTTTTATTTCACTAGAGTTC AATCTGAAGATT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGGAGAAATGATCTAGAGCTGTATATCAGTGTAGCAAAATGCCTTTCCGAAATGACAGAT GATGAAGCCAATCGAGTTGCCCAGATTACCAAGAGTAGCGTAGAAAAAGCTGCCTTTGTC AGACTGTACTTGGTCTCTCAAGGACGATTCCCCTTGATGGGCTTGACTGATGTGCTCAGC GTTGCTGTCCAGCACCATGAGAAAGACACACTGGGCTGGATGATACTGCACAGCTTATAT CAGGCCCGCATTGTGAGCCACGCCAACACCGGGGTTTTGAAGAGAATGGAGTGGCTCTTG GAACTGATGGGTTATATCAGAAATGTTGCTTACCAGTCAACGTCTGTTCAGAACAAGGCC CTTGATGAGGCTTTGGACTTCTTGTTGCTGATATTTGCAACCGCAGTGGTTGCATGGGCA GATCACGCTGCTCCTCTCCTCCTCGGCCTCAGTGCCAGTTGGTTGCCATGGCATCAGGAA AATGGCCCAGCTGGGCCAGCATCAAACTTCCTTGGCAGGAGTCCATTGCACAGGGTCACT CTGCAGGAGGCTCTCACTCTCCTTCCCAGTAGCATGCCTCTTCTGCTTCAGAAAGAGCCA TGGAAGGAGCAGACCCAGAAGTTCATTGACTGGCTATTCAGCATCATGGAAAGCCCTAAA GAAGGCCTCTCAGCAAAATCCAGGGATCTTTTAAAAGCCACCCTGCTGTCCTTGAGAGTT CTCCCAGAGTTTAAGAAGAAAGCCGTATGGACCAGAGCATATGGTTGGTGAACAGTTTTT GCGGTAACCAGCAACATTCTCAGCTGAATGAGGAAAACCATGCAGACAGGAGGAATTTTT CAGAATTAGTGTCTGGGATTACTGAGACATGATGCAGAGGGCTGAGGGTCATGAAAGGGT GGCTGCATAACTGACAGCTTGAACCATGCACGCCAGGAGACGGAAGGGCTATTGCTTCGG TATCCAGGGCAGTTGAGACTGACACAAGAACTTGAATTTTCTTTTATTTCACTAGAGTTC AATCTGAAGATT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 407-566, - strand, RNAz p=0.915844 | |
| 445-547, + strand, RNAz p=0.872893 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 407-566, - strand, RNAz p=0.915844 | |
| 445-547, + strand, RNAz p=0.872893 |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 92-272, gnl|bosTau2|chr23 (16040424-16040604) | |
| 92-272, gnl|canFam2|chr11 (43590021-43590218) | |
| 92-272, gnl|echTel1|scaffold_320664 (4029-3832) | |
| 92-272, gnl|galGal2|chrZ (13031275-13031073) | |
| 92-272, gnl|hg17|chr9 (20976267-20976469) | |
| 92-272, gnl|Hg17|chr9 (20976285-20976465) | |
| 92-272, gnl|loxAfr1|scaffold_8390 (32899-33096) | |
| 92-272, gnl|mm7|chr4 (87804725-87804925) | |
| 92-272, gnl|Mm7|chr4 (87804741-87804921) | |
| 92-272, gnl|monDom2|scaffold_19 (16418460-16418655) | |
| 92-272, gnl|oryCun1|scaffold_113785 (12033-12229) | |
| 92-272, gnl|panTro1|chr11 (21246243-21246445) | |
| 92-272, gnl|rheMac2|chr15 (56008216-56008020) | |
| 92-272, gnl|rn3|chr5 (107701370-107701570) | |
| 92-272, gnl|xenTro1|scaffold_884 (38748-38547) | |
| 368-621, gnl|bosTau2|chr23 (16044933-16045186) | |
| 368-621, gnl|canFam2|chr11 (43601043-43601306) | |
| 368-621, gnl|danRer3|chr7 (8962344-8962598) | |
| 368-621, gnl|dasNov1|scaffold_2032 (16309-16574) | |
| 368-621, gnl|echTel1|scaffold_320664 (574-315) | |
| 368-621, gnl|fr1|chrUn (164180093-164180358) | |
| 368-621, gnl|galGal2|chrZ (13028878-13028613) | |
| 368-621, gnl|hg17|chr9 (20980118-20980383) | |
| 368-621, gnl|Hg17|chr9 (20980120-20980373) | |
| 368-621, gnl|loxAfr1|scaffold_8390 (42603-42862) | |
| 368-621, gnl|mm7|chr4 (87810835-87811101) | |
| 368-621, gnl|Mm7|chr4 (87810837-87811090) | |
| 368-621, gnl|monDom2|scaffold_19 (16424435-16424700) | |
| 368-621, gnl|panTro1|chr11 (21250133-21250398) | |
| 368-621, gnl|rheMac2|chr15 (56004402-56004137) | |
| 368-621, gnl|rn3|chr5 (107705493-107705759) | |
| 368-621, gnl|tetNig1|chrUn_random (111009426-111009676) | |
| 368-621, gnl|xenTro1|scaffold_884 (35081-34835) | |
| 696-1004, gnl|bosTau2|chr23 (16049775-16050073) | |
| 696-1004, gnl|Hg17|chr9 (20985553-20985861) | |
| 696-1004, gnl|Mm7|chr4 (87814341-87814637) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 92-272, gnl|bosTau2|chr23 (16040424-16040604) | |
| 92-272, gnl|canFam2|chr11 (43590021-43590218) | |
| 92-272, gnl|echTel1|scaffold_320664 (4029-3832) | |
| 92-272, gnl|galGal2|chrZ (13031275-13031073) | |
| 92-272, gnl|hg17|chr9 (20976267-20976469) | |
| 92-272, gnl|Hg17|chr9 (20976285-20976465) | |
| 92-272, gnl|loxAfr1|scaffold_8390 (32899-33096) | |
| 92-272, gnl|mm7|chr4 (87804725-87804925) | |
| 92-272, gnl|Mm7|chr4 (87804741-87804921) | |
| 92-272, gnl|monDom2|scaffold_19 (16418460-16418655) | |
| 92-272, gnl|oryCun1|scaffold_113785 (12033-12229) | |
| 92-272, gnl|panTro1|chr11 (21246243-21246445) | |
| 92-272, gnl|rheMac2|chr15 (56008216-56008020) | |
| 92-272, gnl|rn3|chr5 (107701370-107701570) | |
| 92-272, gnl|xenTro1|scaffold_884 (38748-38547) | |
| 368-621, gnl|bosTau2|chr23 (16044933-16045186) | |
| 368-621, gnl|canFam2|chr11 (43601043-43601306) | |
| 368-621, gnl|danRer3|chr7 (8962344-8962598) | |
| 368-621, gnl|dasNov1|scaffold_2032 (16309-16574) | |
| 368-621, gnl|echTel1|scaffold_320664 (574-315) | |
| 368-621, gnl|fr1|chrUn (164180093-164180358) | |
| 368-621, gnl|galGal2|chrZ (13028878-13028613) | |
| 368-621, gnl|hg17|chr9 (20980118-20980383) | |
| 368-621, gnl|Hg17|chr9 (20980120-20980373) | |
| 368-621, gnl|loxAfr1|scaffold_8390 (42603-42862) | |
| 368-621, gnl|mm7|chr4 (87810835-87811101) | |
| 368-621, gnl|Mm7|chr4 (87810837-87811090) | |
| 368-621, gnl|monDom2|scaffold_19 (16424435-16424700) | |
| 368-621, gnl|panTro1|chr11 (21250133-21250398) | |
| 368-621, gnl|rheMac2|chr15 (56004402-56004137) | |
| 368-621, gnl|rn3|chr5 (107705493-107705759) | |
| 368-621, gnl|tetNig1|chrUn_random (111009426-111009676) | |
| 368-621, gnl|xenTro1|scaffold_884 (35081-34835) | |
| 696-1004, gnl|bosTau2|chr23 (16049775-16050073) | |
| 696-1004, gnl|Hg17|chr9 (20985553-20985861) | |
| 696-1004, gnl|Mm7|chr4 (87814341-87814637) |
| Expressed library(ies): 10 entry(ies) | More info |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
| cty (0.20816) | |
| sto (0.179824) | |
| rec (0.17307) | |
| ski (0.146735) | |
| spl (0.143184) | |
| pty (0.142714) | |
| pgl (0.118483) | |
| med (0.116252) | |
| ecc (0.115035) | |
| ldo (0.0970026) |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cty (0.20816) | |
| sto (0.179824) | |
| rec (0.17307) | |
| ski (0.146735) | |
| spl (0.143184) | |
| pty (0.142714) | |
| pgl (0.118483) | |
| med (0.116252) | |
| ecc (0.115035) | |
| ldo (0.0970026) |