Non-Coding RNA Search

Ss1.1-rmed05c_c16.5

Sequence:


               
               GCACAGACATTTGCCCTTCAGAGTCAGAATTAGATGCAAGCAATTGCAAAGGAAAGTTGT
CTCTTGAGTAAAAAACACACATTTTATAGTTTCTTATGAAAGCCATTTTTTTCTATATTG
TGGTTATGGGAAATTAAAGGAATTTAATGCATAAAATTAATTCAAACTTTATTTAAATAA
CCTTAAACTGTGAAGCAGAGAGAAATACCAGGAAATTAAATATTTAGGCCATTATCTTTT
GGTTTCTGACAATACTTTACATTTATTTTAATTCCCCATGTTATTTTCAGTTATGGAGAG
AGTATTAAAATCTAACTTTAAGTGTTTGGATTATTCACATTACACTCGACACTATTTCAT
TAAGTTTTTGATAATATGTAGTCTTCTGTGTGCAAGGAAAGAAATAAATAACACATTTAT
TTGGTGAATGAGTTTTAAGGTTTGCAAGTTGTTACTGATTTTTTGCTCACACAGGATTCT
ATACATTTATACCATCTTAAATCTGGCATATATATATATTTTTTCAGATAGCTTCTACTG
ACAAACACAAAGCTTGTTTGTGTGCAAACATAAGGCTAAATAAATGGTGCTAAAGTGTAT
TATGACTGTCAGATATAATCAGGCAAAATTTTTTGGTGCTTAAATTAATTTTTTCATTGA
TTTATTGATCAATGCATTGAACAGTGTTTATTATTCACAAGTTGTCTTTTATTGGTAAAT
CAAGGCCTCATAGCACATTGTTAAATAAAATGATTGACTAGTCTATGTAACAGCTCACCA
AGCTACTATCTAACTCCTTATAATGTTGCGTCATTAAAGGTCAAGGGATCATGATATTAA
TCTCATCGCTGTAGACCATTAACATGACTGAACTTTTCCACAAAGTACTTATGTTTACAA
TGCTATAACCCTTTGACTGCTGCGGCAACCTTTAACCACACAAATGTCACAAGCTAGAAT
CATCAGCATGGTTCTTGCCATGGCAATCAAAGAGTTAAGGGCTGTGCAGTGATTTGTTTT
GTATTTATTAATTTATATTTATTTCGTTTCCATTCAAGGAGGGGATTTTGGGTGGGGCAG
TTTTTGTCTGCTGTAAGTGTCTTAACCTAGGGAAGGGTTAAATGGCTTTTTATACTATTG
CATCTTCTGTATTTACCATCAATTCATTGTGTTGTAATTAAAAAACTGTCAATAAATAAG
AGAATAGAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCACAGACATTTGCCCTTCAGAGTCAGAATTAGATGCAAGCAATTGCAAAGGAAAGTTGT
CTCTTGAGTAAAAAACACACATTTTATAGTTTCTTATGAAAGCCATTTTTTTCTATATTG
TGGTTATGGGAAATTAAAGGAATTTAATGCATAAAATTAATTCAAACTTTATTTAAATAA
CCTTAAACTGTGAAGCAGAGAGAAATACCAGGAAATTAAATATTTAGGCCATTATCTTTT
GGTTTCTGACAATACTTTACATTTATTTTAATTCCCCATGTTATTTTCAGTTATGGAGAG
AGTATTAAAATCTAACTTTAAGTGTTTGGATTATTCACATTACACTCGACACTATTTCAT
TAAGTTTTTGATAATATGTAGTCTTCTGTGTGCAAGGAAAGAAATAAATAACACATTTAT
TTGGTGAATGAGTTTTAAGGTTTGCAAGTTGTTACTGATTTTTTGCTCACACAGGATTCT
ATACATTTATACCATCTTAAATCTGGCATATATATATATTTTTTCAGATAGCTTCTACTG
ACAAACACAAAGCTTGTTTGTGTGCAAACATAAGGCTAAATAAATGGTGCTAAAGTGTAT
TATGACTGTCAGATATAATCAGGCAAAATTTTTTGGTGCTTAAATTAATTTTTTCATTGA
TTTATTGATCAATGCATTGAACAGTGTTTATTATTCACAAGTTGTCTTTTATTGGTAAAT
CAAGGCCTCATAGCACATTGTTAAATAAAATGATTGACTAGTCTATGTAACAGCTCACCA
AGCTACTATCTAACTCCTTATAATGTTGCGTCATTAAAGGTCAAGGGATCATGATATTAA
TCTCATCGCTGTAGACCATTAACATGACTGAACTTTTCCACAAAGTACTTATGTTTACAA
TGCTATAACCCTTTGACTGCTGCGGCAACCTTTAACCACACAAATGTCACAAGCTAGAAT
CATCAGCATGGTTCTTGCCATGGCAATCAAAGAGTTAAGGGCTGTGCAGTGATTTGTTTT
GTATTTATTAATTTATATTTATTTCGTTTCCATTCAAGGAGGGGATTTTGGGTGGGGCAG
TTTTTGTCTGCTGTAAGTGTCTTAACCTAGGGAAGGGTTAAATGGCTTTTTATACTATTG
CATCTTCTGTATTTACCATCAATTCATTGTGTTGTAATTAAAAAACTGTCAATAAATAAG
AGAATAGAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               2-518, gnl|bosTau2|chr11 (45119131-45118623)
               

               
               2-518, gnl|Hg17|chr8 (89114563-89114060)
               

               
               2-518, gnl|Mm7|chr4 (18051395-18051834)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-518, gnl|bosTau2|chr11 (45119131-45118623)
               

               
               2-518, gnl|Hg17|chr8 (89114563-89114060)
               

               
               2-518, gnl|Mm7|chr4 (18051395-18051834)

Expressed library(ies): 7 entry(ies)

More info

Expressed library(ies): 7 entry(ies)

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               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               fco (0.157208)
               

               
               bfe (0.149858)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               fco (0.157208)
               

               
               bfe (0.149858)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)

	2-518, gnl\|bosTau2\|chr11 (45119131-45118623)
	2-518, gnl\|Hg17\|chr8 (89114563-89114060)
	2-518, gnl\|Mm7\|chr4 (18051395-18051834)

	gul (0.177588)
	fbs (0.175346)
	fco (0.157208)
	bfe (0.149858)
	med (0.116252)
	ecc (0.115035)
	spc (0.113366)