Non-Coding RNA Search

Ss1.1-rmed05c_i19.5

Sequence:


               
               TTTTTTTTCTTTTTGCAGTTATTTATTTAAAGCTAACTTTATACTAAAATATAATATTCA
CACAGAAAGCATACATGTCCTAAGTGTACAGCTCAATTAATTTTCACAAGGGAACACACC
CATGTAGGATCAGAAAATAGAAGCAGATTAGGAAAACTAGGACATAATCAGTACCCTAGA
AGCCCCTTAGTGCCCTCTTCCAGTCTCAGTGTCTACTCCCCAAGAGTAGTGTCACTGCTA
TTAATAGTCACTGCTCTTCTGACTTCCGTCACCATAGATTAGTTTTACCTGTTTTGAACT
TCATATCAAGGGAATCATACATATATCCTCTCTTGTGGTGTGAATCATACATATATCTTC
TTCTTTCACGCAACATTATGTCTGTAGGATTCATCCATATCGTTGCATGTAGTTGTACAT
TGTTCATTCTTTTCCTTGTATAGCATTCCATTATCTACTGATGGGCATTTGGATGGTTTC
CAGGGTTGTTTTCATCTTTCATGTGGGAGTGGCTTGAACTCATCCTCCATGGGAAGAGAG
AGAAGTGGCTAGGGCCATACATGAGGACTTCTTGTGTGGGAAATGAGAGCCTCACTGAGG
TTGAGATTTGCTCTTTTCCAGCCCAGCTGCTGTGCCAAGACCTCTGGCAGCTCCCACCAG
CCATGAGCGCCAAGAAGAGAGGTAGGACCCGGCCTGGGGCTGCGAAGGCTCCCGGGCTGG
TCTCAAGGGGTGCGGGCCGGTTCCTGGGAGGCTGGGGCTCCTTTCCTCGGATTGGTGTGG
GGATCTGCAGGGAGCCCCGCACGGACTCATTCCATGATGTCCCTGTCGGTACGGCCGCAG
CGCCGTCTGCTCAGCGCCCGGGTCAGTAGGAGCCAGTCCTTCGCAGGCGTCCTCGGCAGC
CAGGAGCGGGGGCCCAGGAGCTTTCCAGCCTTCAGTCCCCCGGGACCCTCACGGAAGCCC
CCAGCACTGCCCCGAGTGTCCAAGATGTTTTCCGTGGCACACCCAGCCCCCAAGGTCCCA
CAGCCTGAGCGGCTGGACCTGGTGTACACTGCACTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTCTTTTTGCAGTTATTTATTTAAAGCTAACTTTATACTAAAATATAATATTCA
CACAGAAAGCATACATGTCCTAAGTGTACAGCTCAATTAATTTTCACAAGGGAACACACC
CATGTAGGATCAGAAAATAGAAGCAGATTAGGAAAACTAGGACATAATCAGTACCCTAGA
AGCCCCTTAGTGCCCTCTTCCAGTCTCAGTGTCTACTCCCCAAGAGTAGTGTCACTGCTA
TTAATAGTCACTGCTCTTCTGACTTCCGTCACCATAGATTAGTTTTACCTGTTTTGAACT
TCATATCAAGGGAATCATACATATATCCTCTCTTGTGGTGTGAATCATACATATATCTTC
TTCTTTCACGCAACATTATGTCTGTAGGATTCATCCATATCGTTGCATGTAGTTGTACAT
TGTTCATTCTTTTCCTTGTATAGCATTCCATTATCTACTGATGGGCATTTGGATGGTTTC
CAGGGTTGTTTTCATCTTTCATGTGGGAGTGGCTTGAACTCATCCTCCATGGGAAGAGAG
AGAAGTGGCTAGGGCCATACATGAGGACTTCTTGTGTGGGAAATGAGAGCCTCACTGAGG
TTGAGATTTGCTCTTTTCCAGCCCAGCTGCTGTGCCAAGACCTCTGGCAGCTCCCACCAG
CCATGAGCGCCAAGAAGAGAGGTAGGACCCGGCCTGGGGCTGCGAAGGCTCCCGGGCTGG
TCTCAAGGGGTGCGGGCCGGTTCCTGGGAGGCTGGGGCTCCTTTCCTCGGATTGGTGTGG
GGATCTGCAGGGAGCCCCGCACGGACTCATTCCATGATGTCCCTGTCGGTACGGCCGCAG
CGCCGTCTGCTCAGCGCCCGGGTCAGTAGGAGCCAGTCCTTCGCAGGCGTCCTCGGCAGC
CAGGAGCGGGGGCCCAGGAGCTTTCCAGCCTTCAGTCCCCCGGGACCCTCACGGAAGCCC
CCAGCACTGCCCCGAGTGTCCAAGATGTTTTCCGTGGCACACCCAGCCCCCAAGGTCCCA
CAGCCTGAGCGGCTGGACCTGGTGTACACTGCACTC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               313-432, - strand, RNAz p=0.913248

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               313-432, - strand, RNAz p=0.913248

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               6-520, gnl|bosTau2|chr18 (15243374-15242888)
               

               
               6-520, gnl|Hg17|chr16 (66125210-66126580)
               


               
               656-788, gnl|bosTau2|chr18 (15242181-15242047)
               

               
               656-788, gnl|Hg17|chr16 (66128976-66129109)
               

               
               656-788, gnl|Mm7|chr8 (104211987-104212128)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-520, gnl|bosTau2|chr18 (15243374-15242888)
               

               
               6-520, gnl|Hg17|chr16 (66125210-66126580)
               


               
               656-788, gnl|bosTau2|chr18 (15242181-15242047)
               

               
               656-788, gnl|Hg17|chr16 (66128976-66129109)
               

               
               656-788, gnl|Mm7|chr8 (104211987-104212128)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               thg (0.253582)
               

               
               med (0.232504)
               

               
               fty (0.17584)
               

               
               cst (0.140036)
               

               
               ste (0.135208)
               

               
               nbm (0.0993246)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (0.253582)
               

               
               med (0.232504)
               

               
               fty (0.17584)
               

               
               cst (0.140036)
               

               
               ste (0.135208)
               

               
               nbm (0.0993246)

	6-520, gnl\|bosTau2\|chr18 (15243374-15242888)
	6-520, gnl\|Hg17\|chr16 (66125210-66126580)

	656-788, gnl\|bosTau2\|chr18 (15242181-15242047)
	656-788, gnl\|Hg17\|chr16 (66128976-66129109)
	656-788, gnl\|Mm7\|chr8 (104211987-104212128)

	thg (0.253582)
	med (0.232504)
	fty (0.17584)
	cst (0.140036)
	ste (0.135208)
	nbm (0.0993246)