Ss1.1-rmed05c_n17.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGTGGCCTGCGAGGCAGGCTTGCGGCTGCCTCCTCCCCCAGCCCACCCCCCACCCCCAG GCCTGCAGCTGGGTCCTGCCTCCTCTCGGGTGGGCCATGGCCAAGACTTGGCTGCTGCTT CTCCTGGCCCTCGAGTGTCCAGCCCTGCCCACAGATCCTCTTTCCTCCCCTTCCTCTCCG GAGGTAACCTCTCTCCTAAGGCTGGCACAACAAGGTACTGTGTAGGCAGCACACCCTTCC CCTCTCTGGCCCCGCCAATCACACTGTTGGTGGAGGGGAAGCAGCAGACGCTGGTGGTCT GCCTGGTCCTGGATGTTGCACCCCCCGGCCTTGAGAGTACCATCTGGTTCTCAGCTGGCA ACGGCAGCTTCCTGGATGCCTTCACCTATGGCCCTTCCCCAGCAGCAGATGGCTCCTGGA CTAGCGTGGCTCAGCTTTCTGTGCCCTCTGAGGAGCTGGCAGCCTGGGAGACCTTGGTCT GCCACACGGGGCCTGGACCTGGGAACCCCAGCCAGAGCACACAGCCCCTGCAGCTGTCAG GCAAGCCTTCCTCAGCCAGGACCTGCCTACGGGAACCTCTCAGGGGGACGCGGGGCCAGG CGCTCCGGCTGGAGGCGCTGCGGTTGCTGCTCTTCAAGTTGCTGCTGCTGGACGTGCTCC TGACCTGCAGCCGCCTCCGCGCCCCGCCCGCCGCGCGGGAGGATCCGGCCCAGGCGCTTG GTCCTGGGGACCCCGCTCCCCGCGTCCCGCGCCGCCCCACCGGCGGACCGCCTTCTCCTC CTGCAGCCTCTGCCGGGACGATCGCCCGCAGCCCCCACCGACTGGATTCGCCGCAGTGAT GGTGGGACCCCAGGCCGAGGGCTCAGCCTGTCCGCCCCGCCGGCACTGCAGCCCTAGGAT GGCCGTGCAGTTCCCACCCGCGGTCCGGGTCAGGATCCCGGGAGTCCAGCCTTGGGGGAG GGGCCGCGGGTGCTCAGGGCCTGGCGCTCGCGACCTGCCCTCTGTATTCCAGCCTCAAGC CGGGGAGCATTTGTCTGCGATCTACCTCCTCCAGCTGACTGGAGCTTCCTGAAGAAAAAG GCTTTGTCCCTCCCAGCAGACTGGAAGCCCCTTGAGGGTGGTGCTTGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGTGGCCTGCGAGGCAGGCTTGCGGCTGCCTCCTCCCCCAGCCCACCCCCCACCCCCAG GCCTGCAGCTGGGTCCTGCCTCCTCTCGGGTGGGCCATGGCCAAGACTTGGCTGCTGCTT CTCCTGGCCCTCGAGTGTCCAGCCCTGCCCACAGATCCTCTTTCCTCCCCTTCCTCTCCG GAGGTAACCTCTCTCCTAAGGCTGGCACAACAAGGTACTGTGTAGGCAGCACACCCTTCC CCTCTCTGGCCCCGCCAATCACACTGTTGGTGGAGGGGAAGCAGCAGACGCTGGTGGTCT GCCTGGTCCTGGATGTTGCACCCCCCGGCCTTGAGAGTACCATCTGGTTCTCAGCTGGCA ACGGCAGCTTCCTGGATGCCTTCACCTATGGCCCTTCCCCAGCAGCAGATGGCTCCTGGA CTAGCGTGGCTCAGCTTTCTGTGCCCTCTGAGGAGCTGGCAGCCTGGGAGACCTTGGTCT GCCACACGGGGCCTGGACCTGGGAACCCCAGCCAGAGCACACAGCCCCTGCAGCTGTCAG GCAAGCCTTCCTCAGCCAGGACCTGCCTACGGGAACCTCTCAGGGGGACGCGGGGCCAGG CGCTCCGGCTGGAGGCGCTGCGGTTGCTGCTCTTCAAGTTGCTGCTGCTGGACGTGCTCC TGACCTGCAGCCGCCTCCGCGCCCCGCCCGCCGCGCGGGAGGATCCGGCCCAGGCGCTTG GTCCTGGGGACCCCGCTCCCCGCGTCCCGCGCCGCCCCACCGGCGGACCGCCTTCTCCTC CTGCAGCCTCTGCCGGGACGATCGCCCGCAGCCCCCACCGACTGGATTCGCCGCAGTGAT GGTGGGACCCCAGGCCGAGGGCTCAGCCTGTCCGCCCCGCCGGCACTGCAGCCCTAGGAT GGCCGTGCAGTTCCCACCCGCGGTCCGGGTCAGGATCCCGGGAGTCCAGCCTTGGGGGAG GGGCCGCGGGTGCTCAGGGCCTGGCGCTCGCGACCTGCCCTCTGTATTCCAGCCTCAAGC CGGGGAGCATTTGTCTGCGATCTACCTCCTCCAGCTGACTGGAGCTTCCTGAAGAAAAAG GCTTTGTCCCTCCCAGCAGACTGGAAGCCCCTTGAGGGTGGTGCTTGA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 1-154, gnl|bosTau2|chr23 (12993670-12993816) | |
| 1-154, gnl|canFam2|chr12 (14472404-14472748) | |
| 1-154, gnl|echTel1|scaffold_323377 (71952-72239) | |
| 1-154, gnl|hg17|chr6 (42991567-42991903) | |
| 1-154, gnl|Hg17|chr6 (42991697-42991843) | |
| 1-154, gnl|loxAfr1|scaffold_53563 (9550-9231) | |
| 1-154, gnl|mm7|chr17 (44893036-44892672) | |
| 1-154, gnl|Mm7|chr17 (44892865-44892719) | |
| 1-154, gnl|monDom2|scaffold_0 (198727074-198726738) | |
| 1-154, gnl|oryCun1|scaffold_198310 (48119-47790) | |
| 1-154, gnl|panTro1|chr5 (43585651-43585987) | |
| 1-154, gnl|rheMac2|chr4 (42800653-42800990) | |
| 1-154, gnl|rn3|chr9 (9412245-9412598) | |
| 220-541, gnl|bosTau2|chr23 (12996352-12996673) | |
| 220-541, gnl|canFam2|chr12 (14476481-14476848) | |
| 220-541, gnl|dasNov1|scaffold_84240 (7085-7456) | |
| 220-541, gnl|echTel1|scaffold_323377 (74213-74579) | |
| 220-541, gnl|galGal2|chr14 (16222061-16221713) | |
| 220-541, gnl|hg17|chr6 (42998719-42999085) | |
| 220-541, gnl|Hg17|chr6 (42998743-42999064) | |
| 220-541, gnl|mm7|chr17 (44888004-44887653) | |
| 220-541, gnl|Mm7|chr17 (44887994-44887673) | |
| 220-541, gnl|monDom2|scaffold_0 (198725668-198725311) | |
| 220-541, gnl|oryCun1|scaffold_198310 (44275-43917) | |
| 220-541, gnl|panTro1|chr5 (43592778-43593146) | |
| 220-541, gnl|rheMac2|chr4 (42808653-42809019) | |
| 220-541, gnl|rn3|chr9 (10095574-10095923) | |
| 585-1103, gnl|bosTau2|chr23 (12998298-12998824) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-154, gnl|bosTau2|chr23 (12993670-12993816) | |
| 1-154, gnl|canFam2|chr12 (14472404-14472748) | |
| 1-154, gnl|echTel1|scaffold_323377 (71952-72239) | |
| 1-154, gnl|hg17|chr6 (42991567-42991903) | |
| 1-154, gnl|Hg17|chr6 (42991697-42991843) | |
| 1-154, gnl|loxAfr1|scaffold_53563 (9550-9231) | |
| 1-154, gnl|mm7|chr17 (44893036-44892672) | |
| 1-154, gnl|Mm7|chr17 (44892865-44892719) | |
| 1-154, gnl|monDom2|scaffold_0 (198727074-198726738) | |
| 1-154, gnl|oryCun1|scaffold_198310 (48119-47790) | |
| 1-154, gnl|panTro1|chr5 (43585651-43585987) | |
| 1-154, gnl|rheMac2|chr4 (42800653-42800990) | |
| 1-154, gnl|rn3|chr9 (9412245-9412598) | |
| 220-541, gnl|bosTau2|chr23 (12996352-12996673) | |
| 220-541, gnl|canFam2|chr12 (14476481-14476848) | |
| 220-541, gnl|dasNov1|scaffold_84240 (7085-7456) | |
| 220-541, gnl|echTel1|scaffold_323377 (74213-74579) | |
| 220-541, gnl|galGal2|chr14 (16222061-16221713) | |
| 220-541, gnl|hg17|chr6 (42998719-42999085) | |
| 220-541, gnl|Hg17|chr6 (42998743-42999064) | |
| 220-541, gnl|mm7|chr17 (44888004-44887653) | |
| 220-541, gnl|Mm7|chr17 (44887994-44887673) | |
| 220-541, gnl|monDom2|scaffold_0 (198725668-198725311) | |
| 220-541, gnl|oryCun1|scaffold_198310 (44275-43917) | |
| 220-541, gnl|panTro1|chr5 (43592778-43593146) | |
| 220-541, gnl|rheMac2|chr4 (42808653-42809019) | |
| 220-541, gnl|rn3|chr9 (10095574-10095923) | |
| 585-1103, gnl|bosTau2|chr23 (12998298-12998824) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fty (0.351679) | |
| med (0.232504) |