Non-Coding RNA Search

Ss1.1-rmed05c_n18.5

Sequence:


               
               TCCCAGCCTCCGTGCACTGGTTCCGCGGCCCAGGCAGAGTCCCTGTTCAGGAGTCCCCTC
ATCAGCACTTAGTCGGAAACTTCCTCTTCCTGTCCCAAATCAGCCCCTTGGACTCTGGGA
CCTGGGGCTGCATCATCACCTACAGAGATGGCTTCAATGTCTCCATCACATACAACCTCA
CAGTTCTGGGTCTCCAGCCCCCTGTCCCTCTGACAGTGTATGCTGCAGCCGGTGCCACGG
TGGAGCTGCCCTGCCACCTGCCTCGGGGTGTGGGGACCCAGTCGTCTCTCACTGCCACGT
GGACCCCTCCTGGGGGAGGTCCTGACCTCCTGGTGGCCGGGGACCATGGCAACTTTACCC
TTCGACTAGAGGCTGTGAGCCAGGCCCAGGCTGGGACCTACACCTGCCGCGTCCATCTTC
AGGGGCAGCAGCTTAGTGCCACTGTCACTTTGGCAGTCATCACAGTGACCCCCAAATCCT
CCGGATTACCTGGCAACCCGAAGAAACTGCTCTGTGAGGTGACACCGGCATCCGGGCAAG
AGCGCTTTGTGTGGAGCTCCCTGGACAAGAGGTCTTGGAGGAGCTCCCCGGGACCCTGGC
TGGTGCTGCAGGAGGCCAGACTCCTTTCTCAGCCCTGGCAGTGCCAGCTGTACGAGGGGG
AGAGNCTTCTGGGGACCGCAGGATACTTCACGGAGCTGTCTCGCCCAN------------
CTGGGGGAGCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCCAGCCTCCGTGCACTGGTTCCGCGGCCCAGGCAGAGTCCCTGTTCAGGAGTCCCCTC
ATCAGCACTTAGTCGGAAACTTCCTCTTCCTGTCCCAAATCAGCCCCTTGGACTCTGGGA
CCTGGGGCTGCATCATCACCTACAGAGATGGCTTCAATGTCTCCATCACATACAACCTCA
CAGTTCTGGGTCTCCAGCCCCCTGTCCCTCTGACAGTGTATGCTGCAGCCGGTGCCACGG
TGGAGCTGCCCTGCCACCTGCCTCGGGGTGTGGGGACCCAGTCGTCTCTCACTGCCACGT
GGACCCCTCCTGGGGGAGGTCCTGACCTCCTGGTGGCCGGGGACCATGGCAACTTTACCC
TTCGACTAGAGGCTGTGAGCCAGGCCCAGGCTGGGACCTACACCTGCCGCGTCCATCTTC
AGGGGCAGCAGCTTAGTGCCACTGTCACTTTGGCAGTCATCACAGTGACCCCCAAATCCT
CCGGATTACCTGGCAACCCGAAGAAACTGCTCTGTGAGGTGACACCGGCATCCGGGCAAG
AGCGCTTTGTGTGGAGCTCCCTGGACAAGAGGTCTTGGAGGAGCTCCCCGGGACCCTGGC
TGGTGCTGCAGGAGGCCAGACTCCTTTCTCAGCCCTGGCAGTGCCAGCTGTACGAGGGGG
AGAGNCTTCTGGGGACCGCAGGATACTTCACGGAGCTGTCTCGCCCAN------------
CTGGGGGAGCCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               73-191, - strand, RNAz p=0.861332

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               73-191, - strand, RNAz p=0.861332

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-191, gnl|bosTau2|chr5 (60544988-60544798)
               

               
               1-191, gnl|Hg17|chr12 (6754097-6754293)
               

               
               1-191, gnl|Mm7|chr6 (124935805-124935615)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-191, gnl|bosTau2|chr5 (60544988-60544798)
               

               
               1-191, gnl|Hg17|chr12 (6754097-6754293)
               

               
               1-191, gnl|Mm7|chr6 (124935805-124935615)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               med (0.116252)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               med (0.116252)

	1-191, gnl\|bosTau2\|chr5 (60544988-60544798)
	1-191, gnl\|Hg17\|chr12 (6754097-6754293)
	1-191, gnl\|Mm7\|chr6 (124935805-124935615)