Non-Coding RNA Search

Ss1.1-rmed06c_f15.5

Sequence:


               
               GACCTGGCTAAGGAGGAGGCGCCATCATGGGAGTTGACATCCGCCACAACAAGGACCGAA
AGGTTCGACGCAAGGAGCCCAAGAGCCAGGACATCTACCTGAGGCTGCTGGTCAAGCTGT
ACAGGTTTCTGGCCAGACGAACCAACTCCACCTTCAATCAAGTTGTGCTGAAGAGGTTGT
TCATGAGTCGCACCAACCGGCCACCCCTGTCGCTTTCCCGGATGATCCGGAAGATGAAGC
TTCCTGGCCGGGAAGGCAAGACCGCTGTGGTCGTAGGGACTATAACCGATGACGTGCGTG
TCCAGGAGGTGCCCAAATTGAAGGTGTGCGCTCTGCGCGTGAGCAGCCGTGCCCGGAGCC
GCATTCTCAAGGCCGGGGGCAAAATCCTCACCTTCGACCAGTTGGCCCTGGACTCCCCCA
AAGGCTGTGGCACTGTCCTCCTCTCTGGGCCTCGCAAGGGCCGCGAGGTGTACAGGCATT
TCGGCAAGGCCCCAGGGACCCCGCACAGCCACACCAAACCCTATGTTCGCTCCAAGGGCC
GGAAGTTCGAGCGCGCCAGAGGCCGACGTGCCAGCCGCGGCTACAAAAACTAACCCCAGA
GCCTGCCTTGTTATTAAAAAGATTTTGAATGCTAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACCTGGCTAAGGAGGAGGCGCCATCATGGGAGTTGACATCCGCCACAACAAGGACCGAA
AGGTTCGACGCAAGGAGCCCAAGAGCCAGGACATCTACCTGAGGCTGCTGGTCAAGCTGT
ACAGGTTTCTGGCCAGACGAACCAACTCCACCTTCAATCAAGTTGTGCTGAAGAGGTTGT
TCATGAGTCGCACCAACCGGCCACCCCTGTCGCTTTCCCGGATGATCCGGAAGATGAAGC
TTCCTGGCCGGGAAGGCAAGACCGCTGTGGTCGTAGGGACTATAACCGATGACGTGCGTG
TCCAGGAGGTGCCCAAATTGAAGGTGTGCGCTCTGCGCGTGAGCAGCCGTGCCCGGAGCC
GCATTCTCAAGGCCGGGGGCAAAATCCTCACCTTCGACCAGTTGGCCCTGGACTCCCCCA
AAGGCTGTGGCACTGTCCTCCTCTCTGGGCCTCGCAAGGGCCGCGAGGTGTACAGGCATT
TCGGCAAGGCCCCAGGGACCCCGCACAGCCACACCAAACCCTATGTTCGCTCCAAGGGCC
GGAAGTTCGAGCGCGCCAGAGGCCGACGTGCCAGCCGCGGCTACAAAAACTAACCCCAGA
GCCTGCCTTGTTATTAAAAAGATTTTGAATGCTAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|62752012|ref|NP_001015556.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|62752012|ref|NP_001015556.1|

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               60-670, gnl|bosTau2|chr3 (47442602-47443202)
               

               
               60-670, gnl|Hg17|chr16 (74826989-74826389)
               

               
               60-670, gnl|Mm7|chr6 (128336629-128337236)
               


               
               105-224, gnl|bosTau2|chr18 (50559272-50559391)
               

               
               105-224, gnl|Hg17|chr19 (53812504-53812385)
               


               
               289-641, gnl|bosTau2|chr13 (54360584-54360942)
               

               
               289-641, gnl|Hg17|chr16 (74826756-74826406)
               

               
               289-641, gnl|Mm7|chr6 (128336874-128337211)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               60-670, gnl|bosTau2|chr3 (47442602-47443202)
               

               
               60-670, gnl|Hg17|chr16 (74826989-74826389)
               

               
               60-670, gnl|Mm7|chr6 (128336629-128337236)
               


               
               105-224, gnl|bosTau2|chr18 (50559272-50559391)
               

               
               105-224, gnl|Hg17|chr19 (53812504-53812385)
               


               
               289-641, gnl|bosTau2|chr13 (54360584-54360942)
               

               
               289-641, gnl|Hg17|chr16 (74826756-74826406)
               

               
               289-641, gnl|Mm7|chr6 (128336874-128337211)

Expressed library(ies): 61 entry(ies)

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Expressed library(ies): 61 entry(ies)

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               cag (5.443)
               

               
               eje (4.44752)
               

               
               nco (3.55814)
               

               
               pty (3.13972)
               

               
               cly (3.13669)
               

               
               mcp (3.07167)
               

               
               med (2.79005)
               

               
               fty (2.63759)
               

               
               nca (2.6006)
               

               
               nje (2.4888)
               

               
               fli (2.43457)
               

               
               cov (2.37875)
               

               
               nlu (2.30017)
               

               
               fce (2.17273)
               

               
               eep (2.08359)
               

               
               ese (2.02404)
               

               
               lnt (1.99232)
               

               
               nbm (1.98649)
               

               
               ecc (1.9556)
               

               
               ill (1.93152)
               

               
               ton (1.9305)
               

               
               elu (1.92678)
               

               
               jej (1.87951)
               

               
               ebs (1.77452)
               

               
               col (1.75507)
               

               
               cga (1.67457)
               

               
               ece (1.60514)
               

               
               mas (1.47213)
               

               
               nep (1.4714)
               

               
               nmm (1.46082)
               

               
               csp (1.28949)
               

               
               jca (1.25356)
               

               
               hlv (1.25331)
               

               
               cli (1.06968)
               

               
               eru (0.960384)
               

               
               eli (0.910885)
               

               
               hyp (0.85702)
               

               
               amn (0.835422)
               

               
               fcc (0.791139)
               

               
               fbs (0.526039)
               

               
               cki (0.495704)
               

               
               nms (0.427716)
               

               
               ute (0.398353)
               

               
               duo (0.345602)
               

               
               eye (0.341006)
               

               
               fhi (0.339155)
               

               
               cst (0.280073)
               

               
               che (0.272628)
               

               
               hea (0.204499)
               

               
               sin (0.174948)
               

               
               cut (0.169924)
               

               
               cje (0.165235)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               ssp (0.13552)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               clu (0.119646)
               

               
               pgl (0.118483)
               

               
               cbl (0.114797)

Expressed library(ies): 61 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cag (5.443)
               

               
               eje (4.44752)
               

               
               nco (3.55814)
               

               
               pty (3.13972)
               

               
               cly (3.13669)
               

               
               mcp (3.07167)
               

               
               med (2.79005)
               

               
               fty (2.63759)
               

               
               nca (2.6006)
               

               
               nje (2.4888)
               

               
               fli (2.43457)
               

               
               cov (2.37875)
               

               
               nlu (2.30017)
               

               
               fce (2.17273)
               

               
               eep (2.08359)
               

               
               ese (2.02404)
               

               
               lnt (1.99232)
               

               
               nbm (1.98649)
               

               
               ecc (1.9556)
               

               
               ill (1.93152)
               

               
               ton (1.9305)
               

               
               elu (1.92678)
               

               
               jej (1.87951)
               

               
               ebs (1.77452)
               

               
               col (1.75507)
               

               
               cga (1.67457)
               

               
               ece (1.60514)
               

               
               mas (1.47213)
               

               
               nep (1.4714)
               

               
               nmm (1.46082)
               

               
               csp (1.28949)
               

               
               jca (1.25356)
               

               
               hlv (1.25331)
               

               
               cli (1.06968)
               

               
               eru (0.960384)
               

               
               eli (0.910885)
               

               
               hyp (0.85702)
               

               
               amn (0.835422)
               

               
               fcc (0.791139)
               

               
               fbs (0.526039)
               

               
               cki (0.495704)
               

               
               nms (0.427716)
               

               
               ute (0.398353)
               

               
               duo (0.345602)
               

               
               eye (0.341006)
               

               
               fhi (0.339155)
               

               
               cst (0.280073)
               

               
               che (0.272628)
               

               
               hea (0.204499)
               

               
               sin (0.174948)
               

               
               cut (0.169924)
               

               
               cje (0.165235)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               ssp (0.13552)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               clu (0.119646)
               

               
               pgl (0.118483)
               

               
               cbl (0.114797)

	60-670, gnl\|bosTau2\|chr3 (47442602-47443202)
	60-670, gnl\|Hg17\|chr16 (74826989-74826389)
	60-670, gnl\|Mm7\|chr6 (128336629-128337236)

	105-224, gnl\|bosTau2\|chr18 (50559272-50559391)
	105-224, gnl\|Hg17\|chr19 (53812504-53812385)

	289-641, gnl\|bosTau2\|chr13 (54360584-54360942)
	289-641, gnl\|Hg17\|chr16 (74826756-74826406)
	289-641, gnl\|Mm7\|chr6 (128336874-128337211)

	cag (5.443)
	eje (4.44752)
	nco (3.55814)
	pty (3.13972)
	cly (3.13669)
	mcp (3.07167)
	med (2.79005)
	fty (2.63759)
	nca (2.6006)
	nje (2.4888)
	fli (2.43457)
	cov (2.37875)
	nlu (2.30017)
	fce (2.17273)
	eep (2.08359)
	ese (2.02404)
	lnt (1.99232)
	nbm (1.98649)
	ecc (1.9556)
	ill (1.93152)
	ton (1.9305)
	elu (1.92678)
	jej (1.87951)
	ebs (1.77452)
	col (1.75507)
	cga (1.67457)
	ece (1.60514)
	mas (1.47213)
	nep (1.4714)
	nmm (1.46082)
	csp (1.28949)
	jca (1.25356)
	hlv (1.25331)
	cli (1.06968)
	eru (0.960384)
	eli (0.910885)
	hyp (0.85702)
	amn (0.835422)
	fcc (0.791139)
	fbs (0.526039)
	cki (0.495704)
	nms (0.427716)
	ute (0.398353)
	duo (0.345602)
	eye (0.341006)
	fhi (0.339155)
	cst (0.280073)
	che (0.272628)
	hea (0.204499)
	sin (0.174948)
	cut (0.169924)
	cje (0.165235)
	fat (0.147427)
	spl (0.143184)
	ssp (0.13552)
	ova (0.129132)
	sug (0.127291)
	bla (0.124347)
	clu (0.119646)
	pgl (0.118483)
	cbl (0.114797)