Non-Coding RNA Search

Ss1.1-rmed06c_m7.5

Sequence:


               
               AGTCCATCCCGTCCTGAGAGCCCCAGGCCCCCCTTCGACCTCTAGCCAGATCCCTCCCAG
TCCTCGGAGACCTCCCTTCCCAAGCCTGCCTGGACGGCTATTCTGTGACTTGACAGTGGC
ACTTGACAGTGGCTACCCAGCCCCAAAGCCACCCCTTCATCTGTGACTTAGTCTGTTGTA
GTGGTGAGCTGACACATCCAGGCGCGATGTTGGTGAAACTTGTGCCCCTCTGTGGTGTTG
CTCCTGCCCCGTTCTACAAATATCTATAAATACTCGTGTACACACACACACACACACACA
CACACACACACACAGCCTCGCCTCTAGTGTTGGGATCAATCACCACGCTGTCCTTGAGGA
GTCTTGTGGCCTGACTGCAAGGGAGCACTGTCATCCTGGCATCCCCTCCAAAGCGTGCCA
CCTCTGATGAGCCGCCCTGTCAACGCCTGGCCTGCGGACAGCCAGCCCCTCTGCCCCCGT
CCCCTCCTTCCCCACCTCGAGCGTGGGGGTGCTGTACTGGCAGCTGCGTGGTTCTCTGAC
CGCTACCAGTCTTGCTGTCTCCTGGCTGAGAATAAAACCCATTTCTGGACAATGGGGAAC
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTCCATCCCGTCCTGAGAGCCCCAGGCCCCCCTTCGACCTCTAGCCAGATCCCTCCCAG
TCCTCGGAGACCTCCCTTCCCAAGCCTGCCTGGACGGCTATTCTGTGACTTGACAGTGGC
ACTTGACAGTGGCTACCCAGCCCCAAAGCCACCCCTTCATCTGTGACTTAGTCTGTTGTA
GTGGTGAGCTGACACATCCAGGCGCGATGTTGGTGAAACTTGTGCCCCTCTGTGGTGTTG
CTCCTGCCCCGTTCTACAAATATCTATAAATACTCGTGTACACACACACACACACACACA
CACACACACACACAGCCTCGCCTCTAGTGTTGGGATCAATCACCACGCTGTCCTTGAGGA
GTCTTGTGGCCTGACTGCAAGGGAGCACTGTCATCCTGGCATCCCCTCCAAAGCGTGCCA
CCTCTGATGAGCCGCCCTGTCAACGCCTGGCCTGCGGACAGCCAGCCCCTCTGCCCCCGT
CCCCTCCTTCCCCACCTCGAGCGTGGGGGTGCTGTACTGGCAGCTGCGTGGTTCTCTGAC
CGCTACCAGTCTTGCTGTCTCCTGGCTGAGAATAAAACCCATTTCTGGACAATGGGGAAC
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               483-601, - strand, RNAz p=0.906152

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               483-601, - strand, RNAz p=0.906152

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-601, gnl|bosTau2|chr11 (78148873-78149461)
               

               
               1-601, gnl|Hg17|chr9 (128096503-128097077)
               

               
               1-601, gnl|Mm7|chr2 (32316359-32315780)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-601, gnl|bosTau2|chr11 (78148873-78149461)
               

               
               1-601, gnl|Hg17|chr9 (128096503-128097077)
               

               
               1-601, gnl|Mm7|chr2 (32316359-32315780)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               fcc (0.791139)
               

               
               ebs (0.354904)
               

               
               hyp (0.285673)
               

               
               cga (0.279096)
               

               
               eru (0.240096)
               

               
               ece (0.229305)
               

               
               lnt (0.142308)
               

               
               cbr (0.127975)
               

               
               med (0.116252)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.791139)
               

               
               ebs (0.354904)
               

               
               hyp (0.285673)
               

               
               cga (0.279096)
               

               
               eru (0.240096)
               

               
               ece (0.229305)
               

               
               lnt (0.142308)
               

               
               cbr (0.127975)
               

               
               med (0.116252)

	1-601, gnl\|bosTau2\|chr11 (78148873-78149461)
	1-601, gnl\|Hg17\|chr9 (128096503-128097077)
	1-601, gnl\|Mm7\|chr2 (32316359-32315780)

	fcc (0.791139)
	ebs (0.354904)
	hyp (0.285673)
	cga (0.279096)
	eru (0.240096)
	ece (0.229305)
	lnt (0.142308)
	cbr (0.127975)
	med (0.116252)