Non-Coding RNA Search

Ss1.1-rmed07_h2.5

Sequence:


               
               GATCATCCACAGTCCTTTATAGAACACGTAGCTTTGTCCAGACCCCCAAAGCACTGACTG
CACCTCCCAGTGACCGAAGCCAGGCCAGGGTCTCAGCCTTAATGAGGAGGGCCAGCCAGG
ATCAAAGATGAAGCACCGTGACCTACCTCAGAAGCACTTCTGCGGTGAGGGTTTGTTTTT
AGACATTTATGAGTCTACCGAGATGTGACAGTATTAAGTGGCTTATGTCTGGGTAGGTAA
AGATGATGACATATTTCCCGAAGGAAATGTGGTTTAGAGGAGGAAGAAAGGAAGCAAAAT
TCTGGAATGGGGATGCTCTATTCCTGGCCTTTATTCAGCACCATCATGTGCCACTGCTCC
CCCCACCCCACCCCCGCAGTGGTCTTTCTAGAAGGTAAACTTGTTTCCTCCATAGGAACT
GGAAGTGTTTCTGCCCAGGTGTGAGAGAGTTGGGAGGACTTTGGTATTTTTCATTATCCG
CTGTGTTCTAAGCCACAATACTTAATTTGTTGTCATCTGCCAGCTATGGCTTTGATCATA
TGAGGATTAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATCATCCACAGTCCTTTATAGAACACGTAGCTTTGTCCAGACCCCCAAAGCACTGACTG
CACCTCCCAGTGACCGAAGCCAGGCCAGGGTCTCAGCCTTAATGAGGAGGGCCAGCCAGG
ATCAAAGATGAAGCACCGTGACCTACCTCAGAAGCACTTCTGCGGTGAGGGTTTGTTTTT
AGACATTTATGAGTCTACCGAGATGTGACAGTATTAAGTGGCTTATGTCTGGGTAGGTAA
AGATGATGACATATTTCCCGAAGGAAATGTGGTTTAGAGGAGGAAGAAAGGAAGCAAAAT
TCTGGAATGGGGATGCTCTATTCCTGGCCTTTATTCAGCACCATCATGTGCCACTGCTCC
CCCCACCCCACCCCCGCAGTGGTCTTTCTAGAAGGTAAACTTGTTTCCTCCATAGGAACT
GGAAGTGTTTCTGCCCAGGTGTGAGAGAGTTGGGAGGACTTTGGTATTTTTCATTATCCG
CTGTGTTCTAAGCCACAATACTTAATTTGTTGTCATCTGCCAGCTATGGCTTTGATCATA
TGAGGATTAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               127-244, + strand, RNAz p=0.533153

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               127-244, + strand, RNAz p=0.533153

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

Help | Less info


               
               9-347, gnl|bosTau2|chr25 (25523230-25522891)
               

               
               9-347, gnl|canFam2|chr12 (67843816-67844238)
               

               
               9-347, gnl|hg17|chr6 (108125608-108126038)
               

               
               9-347, gnl|Hg17|chr6 (108125957-108125614)
               

               
               9-347, gnl|loxAfr1|scaffold_358 (69182-68781)
               

               
               9-347, gnl|oryCun1|scaffold_193056 (154995-154609)
               

               
               9-347, gnl|panTro1|chr5 (110430230-110430660)
               

               
               9-347, gnl|rheMac2|chr4 (103713382-103713810)
               


               
               381-548, gnl|bosTau2|chr25 (25522880-25522712)
               

               
               381-548, gnl|Hg17|chr6 (108125604-108125437)
               

               
               381-548, gnl|Mm7|chr10 (42778263-42778427)

Aligned organism(s): 11 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-347, gnl|bosTau2|chr25 (25523230-25522891)
               

               
               9-347, gnl|canFam2|chr12 (67843816-67844238)
               

               
               9-347, gnl|hg17|chr6 (108125608-108126038)
               

               
               9-347, gnl|Hg17|chr6 (108125957-108125614)
               

               
               9-347, gnl|loxAfr1|scaffold_358 (69182-68781)
               

               
               9-347, gnl|oryCun1|scaffold_193056 (154995-154609)
               

               
               9-347, gnl|panTro1|chr5 (110430230-110430660)
               

               
               9-347, gnl|rheMac2|chr4 (103713382-103713810)
               


               
               381-548, gnl|bosTau2|chr25 (25522880-25522712)
               

               
               381-548, gnl|Hg17|chr6 (108125604-108125437)
               

               
               381-548, gnl|Mm7|chr10 (42778263-42778427)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               ill (0.175593)
               

               
               duo (0.172801)
               

               
               med (0.116252)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.175593)
               

               
               duo (0.172801)
               

               
               med (0.116252)

	9-347, gnl\|bosTau2\|chr25 (25523230-25522891)
	9-347, gnl\|canFam2\|chr12 (67843816-67844238)
	9-347, gnl\|hg17\|chr6 (108125608-108126038)
	9-347, gnl\|Hg17\|chr6 (108125957-108125614)
	9-347, gnl\|loxAfr1\|scaffold_358 (69182-68781)
	9-347, gnl\|oryCun1\|scaffold_193056 (154995-154609)
	9-347, gnl\|panTro1\|chr5 (110430230-110430660)
	9-347, gnl\|rheMac2\|chr4 (103713382-103713810)

	381-548, gnl\|bosTau2\|chr25 (25522880-25522712)
	381-548, gnl\|Hg17\|chr6 (108125604-108125437)
	381-548, gnl\|Mm7\|chr10 (42778263-42778427)