Non-Coding RNA Search

Ss1.1-rmed07_j12.5

Sequence:


               
               TCAGCTTCACCAGGAGCCTTGGCAGGAAGGCACAGCCAAAGCAGGATGAAGCTTTCCACG
GGCATCATTTTCTGCTTCCTGATCCTGGGTGTCAGCAGCCAGAGATGGGCATCATTCCTC
AAGGAAGCTGGTCAAGGGGCTAAAGACATGTGGAGAGCCTACTCGGACATGAGAGAAGCC
AATTACAAAAATTCGGACAAGTACTTCCATGCCCGGGGCAACTATGATGCTGCCCGAAGG
GGACCTGGGGGCGCCTGGGCTGCTAAAGTGATCAGCGATGCCAGAGAGAATGTCCAGAGA
GTCACAGACTTGTTTAAGCATGGAGACAGTGGCCACGGAGTGGAGGACTCAAGGGCTGAC
CAGGCTGCCAATGCATGGGGCCGGAGTGGCAAGGACCCCAACCACTTCAGACCTCGTGGC
CTGCCTGACAAGTACTGAGCTGCCTCTGCCTCTGCTCAGGAGATGGGCTGTGAGCCTCCT
GTGAGCAGGCTTCGTGCTGAGCTAGGTTATAGTATTGTGCATCTGTAGTACTTGATAGTT
GGTAAAAAGCATATAAAAATGTGTAATAAATGCTTGTGAATTCCAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCAGCTTCACCAGGAGCCTTGGCAGGAAGGCACAGCCAAAGCAGGATGAAGCTTTCCACG
GGCATCATTTTCTGCTTCCTGATCCTGGGTGTCAGCAGCCAGAGATGGGCATCATTCCTC
AAGGAAGCTGGTCAAGGGGCTAAAGACATGTGGAGAGCCTACTCGGACATGAGAGAAGCC
AATTACAAAAATTCGGACAAGTACTTCCATGCCCGGGGCAACTATGATGCTGCCCGAAGG
GGACCTGGGGGCGCCTGGGCTGCTAAAGTGATCAGCGATGCCAGAGAGAATGTCCAGAGA
GTCACAGACTTGTTTAAGCATGGAGACAGTGGCCACGGAGTGGAGGACTCAAGGGCTGAC
CAGGCTGCCAATGCATGGGGCCGGAGTGGCAAGGACCCCAACCACTTCAGACCTCGTGGC
CTGCCTGACAAGTACTGAGCTGCCTCTGCCTCTGCTCAGGAGATGGGCTGTGAGCCTCCT
GTGAGCAGGCTTCGTGCTGAGCTAGGTTATAGTATTGTGCATCTGTAGTACTTGATAGTT
GGTAAAAAGCATATAAAAATGTGTAATAAATGCTTGTGAATTCCAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               SAA2_MUSVI

Coded protein: 1 entry(ies)

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Protein identifier


               
               SAA2_MUSVI

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               312-429, - strand, RNAz p=0.678854

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               312-429, - strand, RNAz p=0.678854

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               273-583, gnl|bosTau2|chr15 (19225975-19226296)
               

               
               273-583, gnl|Hg17|chr11 (18090881-18090596)
               

               
               273-583, gnl|Mm7|chr7 (42888468-42888200)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               273-583, gnl|bosTau2|chr15 (19225975-19226296)
               

               
               273-583, gnl|Hg17|chr11 (18090881-18090596)
               

               
               273-583, gnl|Mm7|chr7 (42888468-42888200)

Expressed library(ies): 18 entry(ies)

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Expressed library(ies): 18 entry(ies)

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               cga (22.6068)
               

               
               mga (16.3409)
               

               
               mgm (11.3616)
               

               
               col (1.56006)
               

               
               cje (1.15664)
               

               
               med (0.813764)
               

               
               ill (0.526778)
               

               
               thg (0.380373)
               

               
               cmu (0.372787)
               

               
               nmm (0.265604)
               

               
               mgp (0.230681)
               

               
               sto (0.179824)
               

               
               fty (0.17584)
               

               
               isp (0.150376)
               

               
               lin (0.145603)
               

               
               pty (0.142714)
               

               
               cov (0.132153)
               

               
               jca (0.11396)

Expressed library(ies): 18 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cga (22.6068)
               

               
               mga (16.3409)
               

               
               mgm (11.3616)
               

               
               col (1.56006)
               

               
               cje (1.15664)
               

               
               med (0.813764)
               

               
               ill (0.526778)
               

               
               thg (0.380373)
               

               
               cmu (0.372787)
               

               
               nmm (0.265604)
               

               
               mgp (0.230681)
               

               
               sto (0.179824)
               

               
               fty (0.17584)
               

               
               isp (0.150376)
               

               
               lin (0.145603)
               

               
               pty (0.142714)
               

               
               cov (0.132153)
               

               
               jca (0.11396)

	273-583, gnl\|bosTau2\|chr15 (19225975-19226296)
	273-583, gnl\|Hg17\|chr11 (18090881-18090596)
	273-583, gnl\|Mm7\|chr7 (42888468-42888200)

	cga (22.6068)
	mga (16.3409)
	mgm (11.3616)
	col (1.56006)
	cje (1.15664)
	med (0.813764)
	ill (0.526778)
	thg (0.380373)
	cmu (0.372787)
	nmm (0.265604)
	mgp (0.230681)
	sto (0.179824)
	fty (0.17584)
	isp (0.150376)
	lin (0.145603)
	pty (0.142714)
	cov (0.132153)
	jca (0.11396)