Ss1.1-rmed07_p8.5
|
TGGCCTCCTGTGATGGCCCCCCACACCCCCAGGCCCCATCTCCTTGGATAATGCCTGATC
CAGCATCTGTGCAGGTGCGGCTGCTGTGGGATGTTCTGACCCCTGACCCCAATAGCTGCC
CACCTCTCTATGTGCTCTGGAGGGTCCACAGCCAGATCCCCCAGCGGGTGGTATGGCCAG
GCCCGGTACCCGCATCCCTTAGCCTGGCGTTGCTGGAGTCGGTGCTGCGCCACGTCGGTC
TCAACGAAGTGCACAAGGCTATAGGGCTCCTGCTGGAAACTCTAGGACCGCCTCCCACTG
GCCTGCACCTACAGAGGGGCATCTACCGTGAGATCTTATTCCTGACAATGGCTGCTCTGG
GCAAGGACCACGTGGACATAGTGGCCTTTGACAAGAAGTACAAGTCCGCCTTCAACAAGC
TGGCCAGCAGCATGAGCAAGGAGGAGCTGAGGCAGCGGCGGGCACAAATGCCCACCCCGA
AGGCCATTGACTGCCGAAAGTGTTTTGGAGCACCTTTGGAATGCTAGGGACCTTTAAGCT
TCCTTCTCCAGCCTGGGGTGAGGAGGTGAGGGAGAAAGGATTCTAGCGATAACCTGCTTC
CCTGTTCCTTTCATAGAGTTGGGAATAGGCTGGGAAGCATGCCCAGCTGTAGGCTCTGAG
AGGGGGCAGCTGGAAGAGGGACCCTGTTACCAAAAGTCACAATCCCCCAAATTCCAGCCT
GCCCTATATGCTCATGCCGATGTTGGAGGAGGCCTGCGGGGAGCTGGCACATCTCTGTTC
CTCCCTGTCCTATACCAGGAACTCCCCTCCAGGGTACCCACTGATCTGCACTGCCCTGGT
CATTTTATAAGTTTTTGTTTTAAAAAACAACTGGAAAGACACAGAGCTACTGAGCCTTTG
CCCTGAGTGGGAGGGAGGGGTGTCACTCTCCACCAGTGATGGTCCCTCTTCCCTGGAATT
GCTGAAGGAGCCCAAGGCTCTCAATGCTTTTCTACCTTAGTGTTTGTATTTTATTTTAAG
TTATTTATTCTGGAGCCACAGCCCCCTTTGCTTATGAGGTTCTTATGGACAGTGAGAAAG
ACAAGGGAAAGGGGGCCCCACGGTCCTTGAAAGTCAGGAGGTGGGAGCAAGGGGAGTCCC
GAGCTCCCCTTAGGAAAAACTGGTGTCCCTCTCCAGTCCCGAGCCGTCTTGTCCACTCCA
CCTTGGGGCATGCCTCACCCACCCAGGGCCCTGACTGTGCAATAAGGATTGTTCCTTGCG
AAATTTTGTTGGATGTAAATATAGTAAAAGCTGCTT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TGGCCTCCTGTGATGGCCCCCCACACCCCCAGGCCCCATCTCCTTGGATAATGCCTGATC
CAGCATCTGTGCAGGTGCGGCTGCTGTGGGATGTTCTGACCCCTGACCCCAATAGCTGCC
CACCTCTCTATGTGCTCTGGAGGGTCCACAGCCAGATCCCCCAGCGGGTGGTATGGCCAG
GCCCGGTACCCGCATCCCTTAGCCTGGCGTTGCTGGAGTCGGTGCTGCGCCACGTCGGTC
TCAACGAAGTGCACAAGGCTATAGGGCTCCTGCTGGAAACTCTAGGACCGCCTCCCACTG
GCCTGCACCTACAGAGGGGCATCTACCGTGAGATCTTATTCCTGACAATGGCTGCTCTGG
GCAAGGACCACGTGGACATAGTGGCCTTTGACAAGAAGTACAAGTCCGCCTTCAACAAGC
TGGCCAGCAGCATGAGCAAGGAGGAGCTGAGGCAGCGGCGGGCACAAATGCCCACCCCGA
AGGCCATTGACTGCCGAAAGTGTTTTGGAGCACCTTTGGAATGCTAGGGACCTTTAAGCT
TCCTTCTCCAGCCTGGGGTGAGGAGGTGAGGGAGAAAGGATTCTAGCGATAACCTGCTTC
CCTGTTCCTTTCATAGAGTTGGGAATAGGCTGGGAAGCATGCCCAGCTGTAGGCTCTGAG
AGGGGGCAGCTGGAAGAGGGACCCTGTTACCAAAAGTCACAATCCCCCAAATTCCAGCCT
GCCCTATATGCTCATGCCGATGTTGGAGGAGGCCTGCGGGGAGCTGGCACATCTCTGTTC
CTCCCTGTCCTATACCAGGAACTCCCCTCCAGGGTACCCACTGATCTGCACTGCCCTGGT
CATTTTATAAGTTTTTGTTTTAAAAAACAACTGGAAAGACACAGAGCTACTGAGCCTTTG
CCCTGAGTGGGAGGGAGGGGTGTCACTCTCCACCAGTGATGGTCCCTCTTCCCTGGAATT
GCTGAAGGAGCCCAAGGCTCTCAATGCTTTTCTACCTTAGTGTTTGTATTTTATTTTAAG
TTATTTATTCTGGAGCCACAGCCCCCTTTGCTTATGAGGTTCTTATGGACAGTGAGAAAG
ACAAGGGAAAGGGGGCCCCACGGTCCTTGAAAGTCAGGAGGTGGGAGCAAGGGGAGTCCC
GAGCTCCCCTTAGGAAAAACTGGTGTCCCTCTCCAGTCCCGAGCCGTCTTGTCCACTCCA
CCTTGGGGCATGCCTCACCCACCCAGGGCCCTGACTGTGCAATAAGGATTGTTCCTTGCG
AAATTTTGTTGGATGTAAATATAGTAAAAGCTGCTT
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
1012-1235, CR452779 Normalized and Subtracted bovine embryonic and
(emb|CR452779.2|), blast E-value=7e-20, identity=86.36% |
|
1072-1235, POSM0605017_H09R porcine skeletal muscle cDNA library (PoSM) Sus
(gb|DV901248.1|), blast E-value=0, identity=100% |
|
1012-1090, 189741 Pigtailed macaque testis library Macaca nemestrina cDNA 3',
(gb|DY745332.1|), blast E-value=2e-23, identity=94.94% |
|
1012-1090, 175922 Pigtailed macaque ovary library Macaca nemestrina cDNA 3',
(gb|DY756742.1|), blast E-value=2e-23, identity=94.94% |
|
1012-1090, 304790 Pigtailed macaque ovary library Macaca nemestrina cDNA 3',
(gb|EB529975.1|), blast E-value=2e-23, identity=94.94% |
|
1012-1235, LB02754.CR_M22 GC_BGC-27 Bos taurus cDNA clone IMAGE
(gb|EE349262.1|), blast E-value=7e-20, identity=86.36% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
|
1012-1235, CR452779 Normalized and Subtracted bovine embryonic and
(emb|CR452779.2|), blast E-value=7e-20, identity=86.36% |
|
1072-1235, POSM0605017_H09R porcine skeletal muscle cDNA library (PoSM) Sus
(gb|DV901248.1|), blast E-value=0, identity=100% |
|
1012-1090, 189741 Pigtailed macaque testis library Macaca nemestrina cDNA 3',
(gb|DY745332.1|), blast E-value=2e-23, identity=94.94% |
|
1012-1090, 175922 Pigtailed macaque ovary library Macaca nemestrina cDNA 3',
(gb|DY756742.1|), blast E-value=2e-23, identity=94.94% |
|
1012-1090, 304790 Pigtailed macaque ovary library Macaca nemestrina cDNA 3',
(gb|EB529975.1|), blast E-value=2e-23, identity=94.94% |
|
1012-1235, LB02754.CR_M22 GC_BGC-27 Bos taurus cDNA clone IMAGE
(gb|EE349262.1|), blast E-value=7e-20, identity=86.36% |
|
151-317, gnl|bosTau2|chr3 (8115687-8115521) |
|
151-317, gnl|canFam2|chr7 (46172084-46171684) |
|
151-317, gnl|dasNov1|scaffold_5017 (56294-56691) |
|
151-317, gnl|echTel1|scaffold_286841 (49035-49429) |
|
151-317, gnl|fr1|chrUn (260031748-260031367) |
|
151-317, gnl|hg17|chr1 (150716092-150716490) |
|
151-317, gnl|Hg17|chr1 (150716406-150716240) |
|
151-317, gnl|mm7|chr3 (90410417-90410029) |
|
151-317, gnl|Mm7|chr3 (90410113-90410279) |
|
151-317, gnl|monDom2|scaffold_59 (4151024-4150565) |
|
151-317, gnl|oryCun1|scaffold_198987 (76130-75729) |
|
151-317, gnl|panTro1|chr1 (132696956-132697354) |
|
151-317, gnl|rheMac2|chr1 (132447088-132447486) |
|
151-317, gnl|rn3|chr2 (182472557-182472166) |
|
151-317, gnl|tetNig1|chrUn_random (47024156-47023804) |
|
151-317, gnl|xenTro1|scaffold_1238 (192240-191850) |
| |
|
379-1296, gnl|bosTau2|chr3 (8115271-8114350) |
|
379-1296, gnl|Hg17|chr1 (150715994-150715061) |
|
379-1296, gnl|Mm7|chr3 (90410509-90411387) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
151-317, gnl|bosTau2|chr3 (8115687-8115521) |
|
151-317, gnl|canFam2|chr7 (46172084-46171684) |
|
151-317, gnl|dasNov1|scaffold_5017 (56294-56691) |
|
151-317, gnl|echTel1|scaffold_286841 (49035-49429) |
|
151-317, gnl|fr1|chrUn (260031748-260031367) |
|
151-317, gnl|hg17|chr1 (150716092-150716490) |
|
151-317, gnl|Hg17|chr1 (150716406-150716240) |
|
151-317, gnl|mm7|chr3 (90410417-90410029) |
|
151-317, gnl|Mm7|chr3 (90410113-90410279) |
|
151-317, gnl|monDom2|scaffold_59 (4151024-4150565) |
|
151-317, gnl|oryCun1|scaffold_198987 (76130-75729) |
|
151-317, gnl|panTro1|chr1 (132696956-132697354) |
|
151-317, gnl|rheMac2|chr1 (132447088-132447486) |
|
151-317, gnl|rn3|chr2 (182472557-182472166) |
|
151-317, gnl|tetNig1|chrUn_random (47024156-47023804) |
|
151-317, gnl|xenTro1|scaffold_1238 (192240-191850) |
| |
|
379-1296, gnl|bosTau2|chr3 (8115271-8114350) |
|
379-1296, gnl|Hg17|chr1 (150715994-150715061) |
|
379-1296, gnl|Mm7|chr3 (90410509-90411387) |
|
med (0.348756) |
|
ece (0.229305) |
|
csp (0.161186) |
|
cov (0.132153) |
|
cly (0.120642) |
|
jej (0.0989218) |
|
med (0.348756) |
|
ece (0.229305) |
|
csp (0.161186) |
|
cov (0.132153) |
|
cly (0.120642) |
|
jej (0.0989218) |
