Non-Coding RNA Search

Ss1.1-rmed07c_a9.5

Sequence:


               
               GTGTGTGGGTTGCCGTTCGTGGTATTCAGTTATCGCGGTTGGTGGGTCGTGACTGAGCCA
AGATGCTGCGGAATCTGCTGGCTCTTCGTCAGATTGCCCAGAGGACCATAAGCACTGCTT
CACGCAGGCAGCTTGAAAATAAAGTTGCAGAGAAACAAAAACTATTTCAGGAGGATAATG
GGATTCCAGTGCATCTGAAGGGAGGGATCGGCGATGCCTTCCTCTACAGAGCCACCATGA
TTCTGACAGTTGGTGGAACAGCCTATACCATATATCAGCTGGCTGTGGCATCACTTCCTA
AGAAGCAGGATTGACTTCAGTTTATCCTCCCAGCACTCAGTTAGTTCAGTTCCATTCAGC
TCTCTGTGGACCAGTAATCTGATAACTGAGTTCTTCTCTGGGGATCAATATTTATTGACT
TGTACTAACTGCCACCAATAAAGCAGTCTTTACCATGAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGTGTGGGTTGCCGTTCGTGGTATTCAGTTATCGCGGTTGGTGGGTCGTGACTGAGCCA
AGATGCTGCGGAATCTGCTGGCTCTTCGTCAGATTGCCCAGAGGACCATAAGCACTGCTT
CACGCAGGCAGCTTGAAAATAAAGTTGCAGAGAAACAAAAACTATTTCAGGAGGATAATG
GGATTCCAGTGCATCTGAAGGGAGGGATCGGCGATGCCTTCCTCTACAGAGCCACCATGA
TTCTGACAGTTGGTGGAACAGCCTATACCATATATCAGCTGGCTGTGGCATCACTTCCTA
AGAAGCAGGATTGACTTCAGTTTATCCTCCCAGCACTCAGTTAGTTCAGTTCCATTCAGC
TCTCTGTGGACCAGTAATCTGATAACTGAGTTCTTCTCTGGGGATCAATATTTATTGACT
TGTACTAACTGCCACCAATAAAGCAGTCTTTACCATGAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|117120|sp|P13184|CX7A2_BOVIN

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|117120|sp|P13184|CX7A2_BOVIN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               135-294, + strand, RNAz p=0.857386

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               135-294, + strand, RNAz p=0.857386

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               15-485, gnl|bosTau2|chr9 (28835219-28834747)
               

               
               15-485, gnl|Hg17|chr4 (98181096-98181528)
               

               
               15-485, gnl|Mm7|chr12 (71187541-71187095)
               


               
               30-427, gnl|bosTau2|chr13 (3173299-3172891)
               

               
               30-427, gnl|Hg17|chr4 (98181099-98181480)
               

               
               30-427, gnl|Mm7|chr12 (71187526-71187148)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               15-485, gnl|bosTau2|chr9 (28835219-28834747)
               

               
               15-485, gnl|Hg17|chr4 (98181096-98181528)
               

               
               15-485, gnl|Mm7|chr12 (71187541-71187095)
               


               
               30-427, gnl|bosTau2|chr13 (3173299-3172891)
               

               
               30-427, gnl|Hg17|chr4 (98181099-98181480)
               

               
               30-427, gnl|Mm7|chr12 (71187526-71187148)

Expressed library(ies): 58 entry(ies)

More info

Expressed library(ies): 58 entry(ies)

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               cte (1.75644)
               

               
               fce (1.62955)
               

               
               che (1.49945)
               

               
               spc (1.47376)
               

               
               sto (1.43859)
               

               
               fhi (1.01747)
               

               
               hyp (0.85702)
               

               
               col (0.780031)
               

               
               cbe (0.717703)
               

               
               duo (0.691204)
               

               
               eye (0.682012)
               

               
               nlu (0.575043)
               

               
               ill (0.526778)
               

               
               ese (0.506009)
               

               
               cje (0.495704)
               

               
               jej (0.494609)
               

               
               eje (0.494169)
               

               
               nco (0.485201)
               

               
               ecc (0.46014)
               

               
               csk (0.422238)
               

               
               cst (0.420109)
               

               
               hlv (0.417769)
               

               
               hea (0.408998)
               

               
               nbm (0.397298)
               

               
               elu (0.385356)
               

               
               thg (0.380373)
               

               
               nep (0.36785)
               

               
               ton (0.351)
               

               
               sin (0.349895)
               

               
               mcp (0.341297)
               

               
               cut (0.339847)
               

               
               vin (0.332557)
               

               
               sme (0.305437)
               

               
               lnt (0.284616)
               

               
               nca (0.273748)
               

               
               nmm (0.265604)
               

               
               ute (0.265569)
               

               
               ova (0.258264)
               

               
               ebs (0.236602)
               

               
               ece (0.229305)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               tes (0.207814)
               

               
               fli (0.202881)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               cmu (0.186393)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               mga (0.160205)
               

               
               cli (0.152812)
               

               
               lin (0.145603)
               

               
               ssp (0.13552)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               jca (0.11396)

Expressed library(ies): 58 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (1.75644)
               

               
               fce (1.62955)
               

               
               che (1.49945)
               

               
               spc (1.47376)
               

               
               sto (1.43859)
               

               
               fhi (1.01747)
               

               
               hyp (0.85702)
               

               
               col (0.780031)
               

               
               cbe (0.717703)
               

               
               duo (0.691204)
               

               
               eye (0.682012)
               

               
               nlu (0.575043)
               

               
               ill (0.526778)
               

               
               ese (0.506009)
               

               
               cje (0.495704)
               

               
               jej (0.494609)
               

               
               eje (0.494169)
               

               
               nco (0.485201)
               

               
               ecc (0.46014)
               

               
               csk (0.422238)
               

               
               cst (0.420109)
               

               
               hlv (0.417769)
               

               
               hea (0.408998)
               

               
               nbm (0.397298)
               

               
               elu (0.385356)
               

               
               thg (0.380373)
               

               
               nep (0.36785)
               

               
               ton (0.351)
               

               
               sin (0.349895)
               

               
               mcp (0.341297)
               

               
               cut (0.339847)
               

               
               vin (0.332557)
               

               
               sme (0.305437)
               

               
               lnt (0.284616)
               

               
               nca (0.273748)
               

               
               nmm (0.265604)
               

               
               ute (0.265569)
               

               
               ova (0.258264)
               

               
               ebs (0.236602)
               

               
               ece (0.229305)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               tes (0.207814)
               

               
               fli (0.202881)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               cmu (0.186393)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               mga (0.160205)
               

               
               cli (0.152812)
               

               
               lin (0.145603)
               

               
               ssp (0.13552)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               jca (0.11396)

	15-485, gnl\|bosTau2\|chr9 (28835219-28834747)
	15-485, gnl\|Hg17\|chr4 (98181096-98181528)
	15-485, gnl\|Mm7\|chr12 (71187541-71187095)

	30-427, gnl\|bosTau2\|chr13 (3173299-3172891)
	30-427, gnl\|Hg17\|chr4 (98181099-98181480)
	30-427, gnl\|Mm7\|chr12 (71187526-71187148)

	cte (1.75644)
	fce (1.62955)
	che (1.49945)
	spc (1.47376)
	sto (1.43859)
	fhi (1.01747)
	hyp (0.85702)
	col (0.780031)
	cbe (0.717703)
	duo (0.691204)
	eye (0.682012)
	nlu (0.575043)
	ill (0.526778)
	ese (0.506009)
	cje (0.495704)
	jej (0.494609)
	eje (0.494169)
	nco (0.485201)
	ecc (0.46014)
	csk (0.422238)
	cst (0.420109)
	hlv (0.417769)
	hea (0.408998)
	nbm (0.397298)
	elu (0.385356)
	thg (0.380373)
	nep (0.36785)
	ton (0.351)
	sin (0.349895)
	mcp (0.341297)
	cut (0.339847)
	vin (0.332557)
	sme (0.305437)
	lnt (0.284616)
	nca (0.273748)
	nmm (0.265604)
	ute (0.265569)
	ova (0.258264)
	ebs (0.236602)
	ece (0.229305)
	nms (0.213858)
	mas (0.210305)
	tes (0.207814)
	fli (0.202881)
	fcc (0.197785)
	aor (0.195274)
	cmu (0.186393)
	gul (0.177588)
	fbs (0.175346)
	nje (0.16592)
	cki (0.165235)
	mga (0.160205)
	cli (0.152812)
	lin (0.145603)
	ssp (0.13552)
	eru (0.120048)
	med (0.116252)
	jca (0.11396)