Non-Coding RNA Search

Ss1.1-rmed07c_e10.5

Sequence:


               
               TGTTGAGGAACCAGTGCATCCTTTCATATGGGGACTCTGAAAGACAAAGAAGAAACAAGG
AGGCTACTTTAGCTGCCCAAACATTCTAGAAGAGTCTTTTCTATTTCCAAGCTGTTCTGA
TCTAAACAGCTTATCGCAAGTTCCCCCCAGGAGCTGTTCTCCCCTGCCCCCTCTCTGCAT
CCTCCAGCTCTTAGCTGGTTCCACCTAGTTCTGCCACCTGACAACATTTTTCTCAATTAC
TGTACAATTAATGTACAAAATAAACTCTCTCCTTCCCTTGGGCCCTCCTACTATATTCTT
TCCAGCTTCAACTGCTTGGAACCACTCTGTGGCATCCCATTCCAGCCCACCAGCTGGAGA
GCAGGCTGGCTCCAGTGCCTAGTACAGAAATGGCAATTAGACCAAGATGCCACTGTAATT
AACATGACATTTGGAGGAAGATCCCCTCGTGAGACCTTGTACTCTGTTTGCACGATTTTA
TACAATAATTTGCTATTTTTGTACTCATTTCAACAGGACCTGAAAAGATAGAAAACCTGA
ACTAAAAAACAATGAATATTTTTTAAATAACTCACATTAAAGCAGGGGATGAATAAACTG
GATAAACCCTCAATGCCTGCGCTACTTCAAGGTCTGATTACTTCGCTGTCTTCCCAAGGT
TGCAACTTGGTCTCCACAAGTGACCTATGTGTTGAGAGCACTGGTAATGACCAAGACCAG
ATGGGGGCCCCTTTTAAGTTAAACCAAGTAAAATGAAATTGCCAACAGGAGAAAAGAAAG
GAGGGGAGTGAGTGGCGAGGGGAAGTGTGTTGGTTTGGGGGCAACCTCAAGGGTTTTAAG
TATAATAAAGTGGAGTGTCTCTGAAGGACGCTGGGTCCCCACATGCTCGAGTCTACAGGC
GTGGTGTAGTTTCCTTGTTTAATGACTTACGTCAAACAAACGGGAAGAAGAAATTAAAGG
GCAGCCTGGCGTTGATGGTTGGCCGAGCTCTGAAGCCTGCCTCTGCAGGTGCAGATACAT
CCACAAAAGTAACCGCAGTAGAAATAAGAATTGTCCTTTCATTTCCTAAGTGGGTCTGTA
ATAAAAAGTCAGAGTGATGCAAGCCCTGCCTTCCAGCGTGTTACCAGGATAACAAAGGTG
GGACAGCTCTCATTCCCTTCCTCACCCAACTGCTGTCGGTTCATGAATCTGGTAGCCACG
CAGAGGGCTCATCAGCCATTAACTCAGAGGAGACAGCTGTCATTCAGGTTGTCCTAACAC
ATCAATATCATTCACAGCTCAATTTTCATGAGAATTGTAAATTTCAAATCTAAACAAGAA
TGCTAATGTGACTAAAACCACTGTGTTCAGTGGAATTTTTTTCCTCTAAAAGATAATGAC
TGCTAAGCTGTTTTAACAATTCAGATTGTTTAAATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTTGAGGAACCAGTGCATCCTTTCATATGGGGACTCTGAAAGACAAAGAAGAAACAAGG
AGGCTACTTTAGCTGCCCAAACATTCTAGAAGAGTCTTTTCTATTTCCAAGCTGTTCTGA
TCTAAACAGCTTATCGCAAGTTCCCCCCAGGAGCTGTTCTCCCCTGCCCCCTCTCTGCAT
CCTCCAGCTCTTAGCTGGTTCCACCTAGTTCTGCCACCTGACAACATTTTTCTCAATTAC
TGTACAATTAATGTACAAAATAAACTCTCTCCTTCCCTTGGGCCCTCCTACTATATTCTT
TCCAGCTTCAACTGCTTGGAACCACTCTGTGGCATCCCATTCCAGCCCACCAGCTGGAGA
GCAGGCTGGCTCCAGTGCCTAGTACAGAAATGGCAATTAGACCAAGATGCCACTGTAATT
AACATGACATTTGGAGGAAGATCCCCTCGTGAGACCTTGTACTCTGTTTGCACGATTTTA
TACAATAATTTGCTATTTTTGTACTCATTTCAACAGGACCTGAAAAGATAGAAAACCTGA
ACTAAAAAACAATGAATATTTTTTAAATAACTCACATTAAAGCAGGGGATGAATAAACTG
GATAAACCCTCAATGCCTGCGCTACTTCAAGGTCTGATTACTTCGCTGTCTTCCCAAGGT
TGCAACTTGGTCTCCACAAGTGACCTATGTGTTGAGAGCACTGGTAATGACCAAGACCAG
ATGGGGGCCCCTTTTAAGTTAAACCAAGTAAAATGAAATTGCCAACAGGAGAAAAGAAAG
GAGGGGAGTGAGTGGCGAGGGGAAGTGTGTTGGTTTGGGGGCAACCTCAAGGGTTTTAAG
TATAATAAAGTGGAGTGTCTCTGAAGGACGCTGGGTCCCCACATGCTCGAGTCTACAGGC
GTGGTGTAGTTTCCTTGTTTAATGACTTACGTCAAACAAACGGGAAGAAGAAATTAAAGG
GCAGCCTGGCGTTGATGGTTGGCCGAGCTCTGAAGCCTGCCTCTGCAGGTGCAGATACAT
CCACAAAAGTAACCGCAGTAGAAATAAGAATTGTCCTTTCATTTCCTAAGTGGGTCTGTA
ATAAAAAGTCAGAGTGATGCAAGCCCTGCCTTCCAGCGTGTTACCAGGATAACAAAGGTG
GGACAGCTCTCATTCCCTTCCTCACCCAACTGCTGTCGGTTCATGAATCTGGTAGCCACG
CAGAGGGCTCATCAGCCATTAACTCAGAGGAGACAGCTGTCATTCAGGTTGTCCTAACAC
ATCAATATCATTCACAGCTCAATTTTCATGAGAATTGTAAATTTCAAATCTAAACAAGAA
TGCTAATGTGACTAAAACCACTGTGTTCAGTGGAATTTTTTTCCTCTAAAAGATAATGAC
TGCTAAGCTGTTTTAACAATTCAGATTGTTTAAATT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               191-505, - strand, RNAz p=0.986801

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               191-505, - strand, RNAz p=0.986801

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               3-578, gnl|bosTau2|chr17 (30102997-30103558)
               

               
               3-578, gnl|Hg17|chr12 (109549593-109549046)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-578, gnl|bosTau2|chr17 (30102997-30103558)
               

               
               3-578, gnl|Hg17|chr12 (109549593-109549046)

Expressed library(ies): 7 entry(ies)

More info

Expressed library(ies): 7 entry(ies)

Help | Less info


               
               che (0.408942)
               

               
               med (0.232504)
               

               
               ill (0.175593)
               

               
               cki (0.165235)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               cly (0.120642)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               che (0.408942)
               

               
               med (0.232504)
               

               
               ill (0.175593)
               

               
               cki (0.165235)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               cly (0.120642)

	3-578, gnl\|bosTau2\|chr17 (30102997-30103558)
	3-578, gnl\|Hg17\|chr12 (109549593-109549046)

	che (0.408942)
	med (0.232504)
	ill (0.175593)
	cki (0.165235)
	fat (0.147427)
	spl (0.143184)
	cly (0.120642)