Ss1.1-rmed08c_a17.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCTGGGGTTCCGTCCCCGCTGGGCTGCTGCCCTCGCTGGGCTGCTGCAATGGAACTCAG CGCCGACTACCTCCGGGAGAAGCTGCAGCGGGACCTAGAGGCTGAGCACGTGGAAGTGGA GGACACGACTCCCAATCGTTGTGCGTCCAGCTTCCGAGTGCTCGTGGTGTCGGCTAAGTT CGAAGGGAAGCCTCTGCTTCAGAGACACCGGCTTGTGAACACGTGCCTATCGGAAGAGCT TCCGCACATCCATGCCTTTGAGCAGAAAACCCTGACCCCAGAGCAGTGGGCCCGTGAGCA GCAAAAATAAGGAAACCAGACCCGCACACCTATTAAATTATGAATCAGGGCCAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAACTGCCTCTCTAGTTTCCAGGTGCTGAGGGCACCTCC ACTCTCCCGGCTCACTCTAGCTTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCTGGGGTTCCGTCCCCGCTGGGCTGCTGCCCTCGCTGGGCTGCTGCAATGGAACTCAG CGCCGACTACCTCCGGGAGAAGCTGCAGCGGGACCTAGAGGCTGAGCACGTGGAAGTGGA GGACACGACTCCCAATCGTTGTGCGTCCAGCTTCCGAGTGCTCGTGGTGTCGGCTAAGTT CGAAGGGAAGCCTCTGCTTCAGAGACACCGGCTTGTGAACACGTGCCTATCGGAAGAGCT TCCGCACATCCATGCCTTTGAGCAGAAAACCCTGACCCCAGAGCAGTGGGCCCGTGAGCA GCAAAAATAAGGAAACCAGACCCGCACACCTATTAAATTATGAATCAGGGCCAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAACTGCCTCTCTAGTTTCCAGGTGCTGAGGGCACCTCC ACTCTCCCGGCTCACTCTAGCTTT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 108 entry(ies) | More info |
| Aligned organism(s): 108 entry(ies) | Help | Less info |
| 3-121, gnl|bosTau2|chr25 (25080439-25080558) | |
| 3-121, gnl|canFam2|chr6 (21183129-21183391) | |
| 3-121, gnl|canFam2|chr6 (21183288-21182990) | |
| 3-121, gnl|canFam2|chr6 (21183324-21182979) | |
| 3-121, gnl|canFam2|chr6 (21182981-21183266) | |
| 3-121, gnl|canFam2|chr6 (21183301-21182979) | |
| 3-121, gnl|dasNov1|scaffold_68781 (9579-9802) | |
| 3-121, gnl|dasNov1|scaffold_68781 (9737-9442) | |
| 3-121, gnl|dasNov1|scaffold_68781 (9773-9435) | |
| 3-121, gnl|dasNov1|scaffold_68781 (9434-9718) | |
| 3-121, gnl|dasNov1|scaffold_68781 (9750-9435) | |
| 3-121, gnl|echTel1|scaffold_303123 (1145-888) | |
| 3-121, gnl|echTel1|scaffold_303123 (948-1299) | |
| 3-121, gnl|echTel1|scaffold_303123 (986-1300) | |
| 3-121, gnl|echTel1|scaffold_324029 (164806-164614) | |
| 3-121, gnl|echTel1|scaffold_324029 (164605-164814) | |
| 3-121, gnl|hg17|chr11 (73099784-73099991) | |
| 3-121, gnl|hg17|chr16 (29372984-29373236) | |
| 3-121, gnl|Hg17|chr16 (30112464-30112345) | |
| 3-121, gnl|hg17|chr18 (822139-822375) | |
| 3-121, gnl|hg17|chr3 (47516276-47516483) | |
| 3-121, gnl|hg17|chr6 (21710268-21710496) | |
| 3-121, gnl|loxAfr1|scaffold_1209 (19556-19215) | |
| 3-121, gnl|loxAfr1|scaffold_1209 (19395-19684) | |
| 3-121, gnl|loxAfr1|scaffold_1209 (19361-19701) | |
| 3-121, gnl|loxAfr1|scaffold_1209 (19700-19411) | |
| 3-121, gnl|loxAfr1|scaffold_1209 (19384-19708) | |
| 3-121, gnl|mm7|chr7 (122792697-122792437) | |
| 3-121, gnl|mm7|chr7 (122792540-122792829) | |
| 3-121, gnl|mm7|chr7 (122792498-122792840) | |
| 3-121, gnl|mm7|chr7 (122792838-122792567) | |
| 3-121, gnl|mm7|chr7 (122792527-122792840) | |
| 3-121, gnl|Mm7|chr7 (122792549-122792667) | |
| 3-121, gnl|monDom2|scaffold_5 (119583521-119583171) | |
| 3-121, gnl|oryCun1|scaffold_160658 (4346-4050) | |
| 3-121, gnl|oryCun1|scaffold_160658 (4188-4493) | |
| 3-121, gnl|oryCun1|scaffold_160658 (4151-4504) | |
| 3-121, gnl|oryCun1|scaffold_207915 (65939-66133) | |
| 3-121, gnl|oryCun1|scaffold_207915 (66153-65937) | |
| 3-121, gnl|panTro1|chr18 (30877997-30878249) | |
| 3-121, gnl|panTro1|chr2 (48981466-48981673) | |
| 3-121, gnl|panTro1|chr5 (22114955-22115185) | |
| 3-121, gnl|panTro1|chr5 (22114957-22115185) | |
| 3-121, gnl|panTro1|chr9 (74379034-74379241) | |
| 3-121, gnl|rheMac2|chr14 (71860276-71860482) | |
| 3-121, gnl|rheMac2|chr18 (13269736-13269465) | |
| 3-121, gnl|rheMac2|chr2 (89016739-89016532) | |
| 3-121, gnl|rheMac2|chr20 (28170544-28170795) | |
| 3-121, gnl|rheMac2|chr4 (21583187-21583422) | |
| 3-121, gnl|rn3|chr1 (185999202-185998942) | |
| 3-121, gnl|rn3|chr1 (185999003-185999345) | |
| 3-121, gnl|rn3|chr10 (63792022-63791815) | |
| 3-121, gnl|rn3|chr8 (59104905-59105094) | |
| 3-121, gnl|rn3|chr8 (59105113-59104903) | |
| 3-121, gnl|xenTro1|scaffold_1708 (49705-49461) | |
| 210-353, gnl|bosTau2|chr25 (25081035-25081178) | |
| 210-353, gnl|canFam2|chr6 (21182696-21182556) | |
| 210-353, gnl|canFam2|chr6 (21182698-21182558) | |
| 210-353, gnl|canFam2|chr6 (21182561-21182698) | |
| 210-353, gnl|canFam2|chr6 (21182557-21182700) | |
| 210-353, gnl|canFam2|chr6 (21182698-21182561) | |
| 210-353, gnl|dasNov1|scaffold_68781 (9155-9020) | |
| 210-353, gnl|dasNov1|scaffold_68781 (9157-9022) | |
| 210-353, gnl|dasNov1|scaffold_68781 (9024-9157) | |
| 210-353, gnl|dasNov1|scaffold_68781 (9021-9154) | |
| 210-353, gnl|dasNov1|scaffold_68781 (9157-9024) | |
| 210-353, gnl|echTel1|scaffold_303123 (1579-1723) | |
| 210-353, gnl|echTel1|scaffold_303123 (1721-1579) | |
| 210-353, gnl|echTel1|scaffold_303123 (1579-1721) | |
| 210-353, gnl|echTel1|scaffold_324029 (164600-164437) | |
| 210-353, gnl|echTel1|scaffold_324029 (164418-164604) | |
| 210-353, gnl|hg17|chr11 (73099612-73099783) | |
| 210-353, gnl|Hg17|chr16 (30111897-30111754) | |
| 210-353, gnl|hg17|chr18 (822376-822529) | |
| 210-353, gnl|hg17|chr2 (72530855-72530993) | |
| 210-353, gnl|hg17|chr3 (47516497-47516643) | |
| 210-353, gnl|hg17|chr6 (21710497-21710643) | |
| 210-353, gnl|loxAfr1|scaffold_1209 (20015-20155) | |
| 210-353, gnl|loxAfr1|scaffold_1209 (20013-20153) | |
| 210-353, gnl|loxAfr1|scaffold_1209 (20151-20013) | |
| 210-353, gnl|loxAfr1|scaffold_1209 (20154-20011) | |
| 210-353, gnl|loxAfr1|scaffold_1209 (20013-20151) | |
| 210-353, gnl|mm7|chr7 (122793117-122793257) | |
| 210-353, gnl|mm7|chr7 (122793115-122793255) | |
| 210-353, gnl|mm7|chr7 (122793249-122793115) | |
| 210-353, gnl|mm7|chr7 (122793256-122793116) | |
| 210-353, gnl|mm7|chr7 (122793115-122793252) | |
| 210-353, gnl|Mm7|chr7 (122793112-122793255) | |
| 210-353, gnl|oryCun1|scaffold_160658 (4759-4899) | |
| 210-353, gnl|oryCun1|scaffold_160658 (4757-4896) | |
| 210-353, gnl|oryCun1|scaffold_207915 (65804-65936) | |
| 210-353, gnl|oryCun1|scaffold_207915 (65786-65938) | |
| 210-353, gnl|oryCun1|scaffold_207915 (65936-65795) | |
| 210-353, gnl|panTro1|chr12 (74935763-74935901) | |
| 210-353, gnl|panTro1|chr2 (48981687-48981833) | |
| 210-353, gnl|panTro1|chr5 (22115186-22115331) | |
| 210-353, gnl|panTro1|chr5 (22115186-22115332) | |
| 210-353, gnl|panTro1|chr9 (74378863-74379033) | |
| 210-353, gnl|rheMac2|chr13 (72661935-72662073) | |
| 210-353, gnl|rheMac2|chr14 (71860104-71860275) | |
| 210-353, gnl|rheMac2|chr18 (13269464-13269317) | |
| 210-353, gnl|rheMac2|chr2 (89016518-89016376) | |
| 210-353, gnl|rheMac2|chr4 (21583423-21583568) | |
| 210-353, gnl|rn3|chr1 (185999601-185999741) | |
| 210-353, gnl|rn3|chr10 (63791801-63791654) | |
| 210-353, gnl|rn3|chr8 (59104768-59104902) | |
| 210-353, gnl|rn3|chr8 (59104757-59104904) | |
| 210-353, gnl|rn3|chr8 (59104902-59104756) |
| Aligned organism(s): 108 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-121, gnl|bosTau2|chr25 (25080439-25080558) | |
| 3-121, gnl|canFam2|chr6 (21183129-21183391) | |
| 3-121, gnl|canFam2|chr6 (21183288-21182990) | |
| 3-121, gnl|canFam2|chr6 (21183324-21182979) | |
| 3-121, gnl|canFam2|chr6 (21182981-21183266) | |
| 3-121, gnl|canFam2|chr6 (21183301-21182979) | |
| 3-121, gnl|dasNov1|scaffold_68781 (9579-9802) | |
| 3-121, gnl|dasNov1|scaffold_68781 (9737-9442) | |
| 3-121, gnl|dasNov1|scaffold_68781 (9773-9435) | |
| 3-121, gnl|dasNov1|scaffold_68781 (9434-9718) | |
| 3-121, gnl|dasNov1|scaffold_68781 (9750-9435) | |
| 3-121, gnl|echTel1|scaffold_303123 (1145-888) | |
| 3-121, gnl|echTel1|scaffold_303123 (948-1299) | |
| 3-121, gnl|echTel1|scaffold_303123 (986-1300) | |
| 3-121, gnl|echTel1|scaffold_324029 (164806-164614) | |
| 3-121, gnl|echTel1|scaffold_324029 (164605-164814) | |
| 3-121, gnl|hg17|chr11 (73099784-73099991) | |
| 3-121, gnl|hg17|chr16 (29372984-29373236) | |
| 3-121, gnl|Hg17|chr16 (30112464-30112345) | |
| 3-121, gnl|hg17|chr18 (822139-822375) | |
| 3-121, gnl|hg17|chr3 (47516276-47516483) | |
| 3-121, gnl|hg17|chr6 (21710268-21710496) | |
| 3-121, gnl|loxAfr1|scaffold_1209 (19556-19215) | |
| 3-121, gnl|loxAfr1|scaffold_1209 (19395-19684) | |
| 3-121, gnl|loxAfr1|scaffold_1209 (19361-19701) | |
| 3-121, gnl|loxAfr1|scaffold_1209 (19700-19411) | |
| 3-121, gnl|loxAfr1|scaffold_1209 (19384-19708) | |
| 3-121, gnl|mm7|chr7 (122792697-122792437) | |
| 3-121, gnl|mm7|chr7 (122792540-122792829) | |
| 3-121, gnl|mm7|chr7 (122792498-122792840) | |
| 3-121, gnl|mm7|chr7 (122792838-122792567) | |
| 3-121, gnl|mm7|chr7 (122792527-122792840) | |
| 3-121, gnl|Mm7|chr7 (122792549-122792667) | |
| 3-121, gnl|monDom2|scaffold_5 (119583521-119583171) | |
| 3-121, gnl|oryCun1|scaffold_160658 (4346-4050) | |
| 3-121, gnl|oryCun1|scaffold_160658 (4188-4493) | |
| 3-121, gnl|oryCun1|scaffold_160658 (4151-4504) | |
| 3-121, gnl|oryCun1|scaffold_207915 (65939-66133) | |
| 3-121, gnl|oryCun1|scaffold_207915 (66153-65937) | |
| 3-121, gnl|panTro1|chr18 (30877997-30878249) | |
| 3-121, gnl|panTro1|chr2 (48981466-48981673) | |
| 3-121, gnl|panTro1|chr5 (22114955-22115185) | |
| 3-121, gnl|panTro1|chr5 (22114957-22115185) | |
| 3-121, gnl|panTro1|chr9 (74379034-74379241) | |
| 3-121, gnl|rheMac2|chr14 (71860276-71860482) | |
| 3-121, gnl|rheMac2|chr18 (13269736-13269465) | |
| 3-121, gnl|rheMac2|chr2 (89016739-89016532) | |
| 3-121, gnl|rheMac2|chr20 (28170544-28170795) | |
| 3-121, gnl|rheMac2|chr4 (21583187-21583422) | |
| 3-121, gnl|rn3|chr1 (185999202-185998942) | |
| 3-121, gnl|rn3|chr1 (185999003-185999345) | |
| 3-121, gnl|rn3|chr10 (63792022-63791815) | |
| 3-121, gnl|rn3|chr8 (59104905-59105094) | |
| 3-121, gnl|rn3|chr8 (59105113-59104903) | |
| 3-121, gnl|xenTro1|scaffold_1708 (49705-49461) | |
| 210-353, gnl|bosTau2|chr25 (25081035-25081178) | |
| 210-353, gnl|canFam2|chr6 (21182696-21182556) | |
| 210-353, gnl|canFam2|chr6 (21182698-21182558) | |
| 210-353, gnl|canFam2|chr6 (21182561-21182698) | |
| 210-353, gnl|canFam2|chr6 (21182557-21182700) | |
| 210-353, gnl|canFam2|chr6 (21182698-21182561) | |
| 210-353, gnl|dasNov1|scaffold_68781 (9155-9020) | |
| 210-353, gnl|dasNov1|scaffold_68781 (9157-9022) | |
| 210-353, gnl|dasNov1|scaffold_68781 (9024-9157) | |
| 210-353, gnl|dasNov1|scaffold_68781 (9021-9154) | |
| 210-353, gnl|dasNov1|scaffold_68781 (9157-9024) | |
| 210-353, gnl|echTel1|scaffold_303123 (1579-1723) | |
| 210-353, gnl|echTel1|scaffold_303123 (1721-1579) | |
| 210-353, gnl|echTel1|scaffold_303123 (1579-1721) | |
| 210-353, gnl|echTel1|scaffold_324029 (164600-164437) | |
| 210-353, gnl|echTel1|scaffold_324029 (164418-164604) | |
| 210-353, gnl|hg17|chr11 (73099612-73099783) | |
| 210-353, gnl|Hg17|chr16 (30111897-30111754) | |
| 210-353, gnl|hg17|chr18 (822376-822529) | |
| 210-353, gnl|hg17|chr2 (72530855-72530993) | |
| 210-353, gnl|hg17|chr3 (47516497-47516643) | |
| 210-353, gnl|hg17|chr6 (21710497-21710643) | |
| 210-353, gnl|loxAfr1|scaffold_1209 (20015-20155) | |
| 210-353, gnl|loxAfr1|scaffold_1209 (20013-20153) | |
| 210-353, gnl|loxAfr1|scaffold_1209 (20151-20013) | |
| 210-353, gnl|loxAfr1|scaffold_1209 (20154-20011) | |
| 210-353, gnl|loxAfr1|scaffold_1209 (20013-20151) | |
| 210-353, gnl|mm7|chr7 (122793117-122793257) | |
| 210-353, gnl|mm7|chr7 (122793115-122793255) | |
| 210-353, gnl|mm7|chr7 (122793249-122793115) | |
| 210-353, gnl|mm7|chr7 (122793256-122793116) | |
| 210-353, gnl|mm7|chr7 (122793115-122793252) | |
| 210-353, gnl|Mm7|chr7 (122793112-122793255) | |
| 210-353, gnl|oryCun1|scaffold_160658 (4759-4899) | |
| 210-353, gnl|oryCun1|scaffold_160658 (4757-4896) | |
| 210-353, gnl|oryCun1|scaffold_207915 (65804-65936) | |
| 210-353, gnl|oryCun1|scaffold_207915 (65786-65938) | |
| 210-353, gnl|oryCun1|scaffold_207915 (65936-65795) | |
| 210-353, gnl|panTro1|chr12 (74935763-74935901) | |
| 210-353, gnl|panTro1|chr2 (48981687-48981833) | |
| 210-353, gnl|panTro1|chr5 (22115186-22115331) | |
| 210-353, gnl|panTro1|chr5 (22115186-22115332) | |
| 210-353, gnl|panTro1|chr9 (74378863-74379033) | |
| 210-353, gnl|rheMac2|chr13 (72661935-72662073) | |
| 210-353, gnl|rheMac2|chr14 (71860104-71860275) | |
| 210-353, gnl|rheMac2|chr18 (13269464-13269317) | |
| 210-353, gnl|rheMac2|chr2 (89016518-89016376) | |
| 210-353, gnl|rheMac2|chr4 (21583423-21583568) | |
| 210-353, gnl|rn3|chr1 (185999601-185999741) | |
| 210-353, gnl|rn3|chr10 (63791801-63791654) | |
| 210-353, gnl|rn3|chr8 (59104768-59104902) | |
| 210-353, gnl|rn3|chr8 (59104757-59104904) | |
| 210-353, gnl|rn3|chr8 (59104902-59104756) |
| Expressed library(ies): 20 entry(ies) | More info |
| Expressed library(ies): 20 entry(ies) | Help | Less info |
| cly (0.603209) | |
| cli (0.458435) | |
| nlu (0.383362) | |
| csp (0.322373) | |
| jca (0.22792) | |
| eje (0.197668) | |
| col (0.195008) | |
| sto (0.179824) | |
| gul (0.177588) | |
| ill (0.175593) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| cov (0.132153) | |
| eep (0.122564) | |
| clu (0.119646) | |
| med (0.116252) | |
| nbm (0.0993246) | |
| jej (0.0989218) |
| Expressed library(ies): 20 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cly (0.603209) | |
| cli (0.458435) | |
| nlu (0.383362) | |
| csp (0.322373) | |
| jca (0.22792) | |
| eje (0.197668) | |
| col (0.195008) | |
| sto (0.179824) | |
| gul (0.177588) | |
| ill (0.175593) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| cov (0.132153) | |
| eep (0.122564) | |
| clu (0.119646) | |
| med (0.116252) | |
| nbm (0.0993246) | |
| jej (0.0989218) |