Non-Coding RNA Search

Ss1.1-rmed08c_g11.5

Sequence:


               
               GCCCACGCGTCCGGGCCCACTACCAGACGGATTACTTCCACCTTTTCATCTGCGTGGCCA
TCGTGGCCATCTATGGCGATGACGTCATTGAGCAGCAGCTGGCCACCGACCAGATGCTTC
TGCACTTTGGAAACCTGGCCATGCACATGAATGGGGAGCTTGTTCTCAGGAAGGCGAGGA
GTTTGCTGTATCAGTTCCGCCTCTTGCCCCGGATCCCCTGCAGCCTGCACGACCTGTGCA
AGCTGTGTGGTTCCGGCATGTGGGACAGTGGTTACATGCCTGCTGTGGAATGCACCGGCC
AGCACCCCGGGTCGGAGAGCTGCCCCTACGGGGGCACCGCGGAGACCCCTTCACCCAAGC
CCCCCAGAGAAGGCAGGAAGGGCCCAAAGACGCCTCGGGAAGGCTTCGGTTTCCGAAGAT
AGGTTGGGTTTCTGCAGATAGGTTGAGCTCCCTGTGCTGGATGAGGGGTGAGGGGGTCTC
AGCCAGGTCCTGAACACATGGGAGGGGGTGGGGATGGGCATGGAGGGGACGGGATGGTAG
AAACATAAAGAAAATGCCCGTGGGCGACACGAAGGGAAACTTTTCATATTAAGGACAAAA
TCAGAGTCCGGAAGTGACAGAAGTAAAACCCACCAGCTGCCCAGAGAAAAGTCAGCTCCC
CCAATAGCGGGACTAGCATGCACGGCCACCCTACCCGGAGACACGGGCCTGGCTGCCTTT
GATGGATCTCCACACATCCGAGGACTTCCTCCAGCTTCATCAGCCACCGAAAGGTGTTGC
CAGCATCAGGAAAGGTGGGGACGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCCACGCGTCCGGGCCCACTACCAGACGGATTACTTCCACCTTTTCATCTGCGTGGCCA
TCGTGGCCATCTATGGCGATGACGTCATTGAGCAGCAGCTGGCCACCGACCAGATGCTTC
TGCACTTTGGAAACCTGGCCATGCACATGAATGGGGAGCTTGTTCTCAGGAAGGCGAGGA
GTTTGCTGTATCAGTTCCGCCTCTTGCCCCGGATCCCCTGCAGCCTGCACGACCTGTGCA
AGCTGTGTGGTTCCGGCATGTGGGACAGTGGTTACATGCCTGCTGTGGAATGCACCGGCC
AGCACCCCGGGTCGGAGAGCTGCCCCTACGGGGGCACCGCGGAGACCCCTTCACCCAAGC
CCCCCAGAGAAGGCAGGAAGGGCCCAAAGACGCCTCGGGAAGGCTTCGGTTTCCGAAGAT
AGGTTGGGTTTCTGCAGATAGGTTGAGCTCCCTGTGCTGGATGAGGGGTGAGGGGGTCTC
AGCCAGGTCCTGAACACATGGGAGGGGGTGGGGATGGGCATGGAGGGGACGGGATGGTAG
AAACATAAAGAAAATGCCCGTGGGCGACACGAAGGGAAACTTTTCATATTAAGGACAAAA
TCAGAGTCCGGAAGTGACAGAAGTAAAACCCACCAGCTGCCCAGAGAAAAGTCAGCTCCC
CCAATAGCGGGACTAGCATGCACGGCCACCCTACCCGGAGACACGGGCCTGGCTGCCTTT
GATGGATCTCCACACATCCGAGGACTTCCTCCAGCTTCATCAGCCACCGAAAGGTGTTGC
CAGCATCAGGAAAGGTGGGGACGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61884019|ref|XP_589545.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61884019|ref|XP_589545.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               172-648, + strand, RNAz p=0.850292

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               172-648, + strand, RNAz p=0.850292

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_019020, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_019020, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               172-795, gnl|bosTau2|chr19 (47079026-47078405)
               

               
               172-795, gnl|Hg17|chr17 (75529503-75528885)
               

               
               172-795, gnl|Mm7|chr11 (119256863-119256317)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               172-795, gnl|bosTau2|chr19 (47079026-47078405)
               

               
               172-795, gnl|Hg17|chr17 (75529503-75528885)
               

               
               172-795, gnl|Mm7|chr11 (119256863-119256317)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cga (0.279096)
               

               
               med (0.116252)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cga (0.279096)
               

               
               med (0.116252)

	172-795, gnl\|bosTau2\|chr19 (47079026-47078405)
	172-795, gnl\|Hg17\|chr17 (75529503-75528885)
	172-795, gnl\|Mm7\|chr11 (119256863-119256317)