Non-Coding RNA Search

Ss1.1-rmed08c_k13.5

Sequence:


               
               AACCTGCTCCTGACAGTGGCTCCTCCAAACAGGCAAGGAGGATGTCGGGAGAGAGCGAAC
GCAAACCTCCTGGGGCTGAGAGTCGGAGCACGGGCACAGTTGGGCTCTGGGCCACCGCCG
CCCCCCCTGCTGCTCCTCCTCCAGGCTCTGAACCAGGCAGCCAGGAGCAGAGCGCCACAG
GGCTGAGGCCACCCAGGCGCCCTGTGTCTCCGTGGGAAGCGAGGAGGATGCAGCTCGGGG
GGGGGGGGGCCCTGGGGCGGGAGGCAGGTGCCATTTGGGAGGCGCGGGCTGGGGGCGGGG
CAGCAGCCCAGCAAACACCCACCGTGGTTTCCAGTCTACCCGGAGGCGGGGGGGGGTCTG
ATCAAGGAGTCCTTTCTGCTGTTTCTGCATTAACCACTTGAGGGGAAAGTATAATTTGTA
ATAAATCTGTATTACAGTGGAAGTTCCACGGCTCCAGTGGCTATAAAAATTAATTCCTTA
ACCTAAACATTATTATATGGCTTTTAAAATGAATTGGTGTGTGGTGGGCTTCCTGGTTTG
GGCCGTTATTAGTAATTAGCGTAATCAAATAACGTTCGATCTCTCCCGGGTTTGTTTCTC
CTCCTGCCTGCAGCCCTCCGCTGGCCTCCCCCCCAGGAGGACCCCACCAACAGGGTCCCA
CTGAATAATTACCCTCGGGATGTGATGGGCTGACACTGCCTCCTGACGTCGACGGCTGAG
AAAGATGCTCTTTTTCTATCCCTCAAACGGTCAACTTTTTCGTTTGTTTTTGTTTGTTTT
TGCTTTTTTTAAGGCCGCACCCCAGACACATAGAGGTCCCCAGGCTAA------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------AATTTCCTCACTGCTCTTTCTTTTTCAAAGTCCTGTGTCTGCTGGGGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACCTGCTCCTGACAGTGGCTCCTCCAAACAGGCAAGGAGGATGTCGGGAGAGAGCGAAC
GCAAACCTCCTGGGGCTGAGAGTCGGAGCACGGGCACAGTTGGGCTCTGGGCCACCGCCG
CCCCCCCTGCTGCTCCTCCTCCAGGCTCTGAACCAGGCAGCCAGGAGCAGAGCGCCACAG
GGCTGAGGCCACCCAGGCGCCCTGTGTCTCCGTGGGAAGCGAGGAGGATGCAGCTCGGGG
GGGGGGGGGCCCTGGGGCGGGAGGCAGGTGCCATTTGGGAGGCGCGGGCTGGGGGCGGGG
CAGCAGCCCAGCAAACACCCACCGTGGTTTCCAGTCTACCCGGAGGCGGGGGGGGGTCTG
ATCAAGGAGTCCTTTCTGCTGTTTCTGCATTAACCACTTGAGGGGAAAGTATAATTTGTA
ATAAATCTGTATTACAGTGGAAGTTCCACGGCTCCAGTGGCTATAAAAATTAATTCCTTA
ACCTAAACATTATTATATGGCTTTTAAAATGAATTGGTGTGTGGTGGGCTTCCTGGTTTG
GGCCGTTATTAGTAATTAGCGTAATCAAATAACGTTCGATCTCTCCCGGGTTTGTTTCTC
CTCCTGCCTGCAGCCCTCCGCTGGCCTCCCCCCCAGGAGGACCCCACCAACAGGGTCCCA
CTGAATAATTACCCTCGGGATGTGATGGGCTGACACTGCCTCCTGACGTCGACGGCTGAG
AAAGATGCTCTTTTTCTATCCCTCAAACGGTCAACTTTTTCGTTTGTTTTTGTTTGTTTT
TGCTTTTTTTAAGGCCGCACCCCAGACACATAGAGGTCCCCAGGCTAA------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------AATTTCCTCACTGCTCTTTCTTTTTCAAAGTCCTGTGTCTGCTGGGGT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               377-487, - strand, RNAz p=0.942346

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               377-487, - strand, RNAz p=0.942346

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               260-737, gnl|bosTau2|chr19 (48424058-48423582)
               

               
               260-737, gnl|Hg17|chr17 (73043387-73043871)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               260-737, gnl|bosTau2|chr19 (48424058-48423582)
               

               
               260-737, gnl|Hg17|chr17 (73043387-73043871)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               med (0.348756)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               med (0.348756)

	260-737, gnl\|bosTau2\|chr19 (48424058-48423582)
	260-737, gnl\|Hg17\|chr17 (73043387-73043871)