Non-Coding RNA Search

Ss1.1-rmed09c_e9.5

Sequence:


               
               CCCCCCCCCCCCCACGCCCAGCCAAGGCTCGTGAAA------------------------
------------------------------------------------------------
------------------------------------AAAACATCTTTCTTCATGCATTAC
ACCTAAAGGTTAACAATGGCTGATGACCAGCAGTCATGGCAGTAAATAACAAAATTGGGT
AGTGGCATCAATTAACTGCCTGCTAAGTTTGTAAGTATTTCTGTATACAGGATATGATCT
TTAGAATTCCTAGATGAGTGATGAAATGGGATTTTGAATTAATCTGATTCCAAAGCCTCT
GTTTGCAGTAGTTTAAGGAATTTTAAAAGAGGCACAAATCTACATTCTAGTACTGAATAA
ATAGTGCTCAGATATCTCCAACAATTGGTCAGATATTAACCAAACTTCAATGGTTATAAG
ACAAGAATTTAATGAAAACTGGTAGTGGGTATATAGTAATCCACAGGGCTGAATAATACA
CGGGACTGTATTAGAAATTTAAAATAGATGCTGAAGTAGGTGTTACATGTTATCATCATC
TGATTCATCTTCTTCCTTCAAAGATTCCTGTTAAGAAGAAAATAATGTTTAAAATAAATT
TTTAGCATGGCTGTAACAACCTGACTATAGGTAAAAAATGAACAAGGGTTTAGAATAAGA
CAGCCAAGTAAAGGATAGCAAAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCCCCCCCCCCCACGCCCAGCCAAGGCTCGTGAAA------------------------
------------------------------------------------------------
------------------------------------AAAACATCTTTCTTCATGCATTAC
ACCTAAAGGTTAACAATGGCTGATGACCAGCAGTCATGGCAGTAAATAACAAAATTGGGT
AGTGGCATCAATTAACTGCCTGCTAAGTTTGTAAGTATTTCTGTATACAGGATATGATCT
TTAGAATTCCTAGATGAGTGATGAAATGGGATTTTGAATTAATCTGATTCCAAAGCCTCT
GTTTGCAGTAGTTTAAGGAATTTTAAAAGAGGCACAAATCTACATTCTAGTACTGAATAA
ATAGTGCTCAGATATCTCCAACAATTGGTCAGATATTAACCAAACTTCAATGGTTATAAG
ACAAGAATTTAATGAAAACTGGTAGTGGGTATATAGTAATCCACAGGGCTGAATAATACA
CGGGACTGTATTAGAAATTTAAAATAGATGCTGAAGTAGGTGTTACATGTTATCATCATC
TGATTCATCTTCTTCCTTCAAAGATTCCTGTTAAGAAGAAAATAATGTTTAAAATAAATT
TTTAGCATGGCTGTAACAACCTGACTATAGGTAAAAAATGAACAAGGGTTTAGAATAAGA
CAGCCAAGTAAAGGATAGCAAAGT

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               63-572, gnl|bosTau2|chr10 (48080317-48080806)
               

               
               63-572, gnl|Hg17|chr14 (57808778-57808229)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               63-572, gnl|bosTau2|chr10 (48080317-48080806)
               

               
               63-572, gnl|Hg17|chr14 (57808778-57808229)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               ssp (0.13552)
               

               
               med (0.116252)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ssp (0.13552)
               

               
               med (0.116252)

	63-572, gnl\|bosTau2\|chr10 (48080317-48080806)
	63-572, gnl\|Hg17\|chr14 (57808778-57808229)