Ss1.1-rmed09c_f10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACCTGCCCGGATGCAAAGGAAGGAGACCAGAAGAATGGCACAGAATTTCTCATCTGACGG AATGTTCATAAAGAAGACGAAGAAACTTTTCTGCAATTAGATAAAAAGGGACCACAAAAA CATCACTTTGATCAGCCTTCAGTAGCACCTAGAAAAAACTACTCTTTCTCAAGAGAGGAG GTTAGACAGATTGATCGGGAGAATCAGAGGCTTTTGAAAGAACTGTCAAGACAGGCTGAA AAACCAGGAAGCAGAAGTACGATTCCAAGAAGATCGACTGGTCCCCCCCCTAAGTTATAT CACAGTGCTCTCAACAGACAGAGGGAACAACAAAGGATTGAAAGAGAAAATTTGGCTTTA TTGAAAAGGCTTGAAGCTGTGAAACCAACAGTTGGTATGAAACGCTCAGAACAGCTGATG GACTATCACCGCAACATGGGCTACCTCAGCTCTTCCCCCACCTCTAGACGTGTGAGGTCC ACTCTTGGCCAATACAGCCCATTAAGAGATGCTTCCAGGACATCCAGTGCTACCAGCGGT CTCAGTTGTAAGAGTGAGCGATCAGCTTTTGACACATCCAGCGGCCATTTGCTAAGACCT AAGCCCCCTAATGTCCGTACAGCTTGGTTATAAAACTCTTTTTACTTTAAACATTGTTCA TCCAATTCTTACTGAAGTGCTCTTGCATATTACCATAATTCTCTGTGTAAAAATCTATAA TACTGTTTTCAGCAATTTAAAGTGTATAACAATGACTCGTAATTTATTGTAATTCAATGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACCTGCCCGGATGCAAAGGAAGGAGACCAGAAGAATGGCACAGAATTTCTCATCTGACGG AATGTTCATAAAGAAGACGAAGAAACTTTTCTGCAATTAGATAAAAAGGGACCACAAAAA CATCACTTTGATCAGCCTTCAGTAGCACCTAGAAAAAACTACTCTTTCTCAAGAGAGGAG GTTAGACAGATTGATCGGGAGAATCAGAGGCTTTTGAAAGAACTGTCAAGACAGGCTGAA AAACCAGGAAGCAGAAGTACGATTCCAAGAAGATCGACTGGTCCCCCCCCTAAGTTATAT CACAGTGCTCTCAACAGACAGAGGGAACAACAAAGGATTGAAAGAGAAAATTTGGCTTTA TTGAAAAGGCTTGAAGCTGTGAAACCAACAGTTGGTATGAAACGCTCAGAACAGCTGATG GACTATCACCGCAACATGGGCTACCTCAGCTCTTCCCCCACCTCTAGACGTGTGAGGTCC ACTCTTGGCCAATACAGCCCATTAAGAGATGCTTCCAGGACATCCAGTGCTACCAGCGGT CTCAGTTGTAAGAGTGAGCGATCAGCTTTTGACACATCCAGCGGCCATTTGCTAAGACCT AAGCCCCCTAATGTCCGTACAGCTTGGTTATAAAACTCTTTTTACTTTAAACATTGTTCA TCCAATTCTTACTGAAGTGCTCTTGCATATTACCATAATTCTCTGTGTAAAAATCTATAA TACTGTTTTCAGCAATTTAAAGTGTATAACAATGACTCGTAATTTATTGTAATTCAATGC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 125-284, + strand, RNAz p=0.834588 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 125-284, + strand, RNAz p=0.834588 |
| Aligned organism(s): 30 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
| 86-355, gnl|bosTau2|chr27 (9672617-9672883) | |
| 86-355, gnl|canFam2|chr16 (48395168-48394898) | |
| 86-355, gnl|canFam2|chr16 (48395174-48394885) | |
| 86-355, gnl|dasNov1|scaffold_75303 (4660-4390) | |
| 86-355, gnl|dasNov1|scaffold_75303 (4666-4376) | |
| 86-355, gnl|echTel1|scaffold_315568 (6540-6265) | |
| 86-355, gnl|echTel1|scaffold_315568 (6546-6252) | |
| 86-355, gnl|galGal2|chr4 (39956745-39956454) | |
| 86-355, gnl|hg17|chr1 (36008237-36008471) | |
| 86-355, gnl|hg17|chr4 (186472084-186472371) | |
| 86-355, gnl|Hg17|chr4 (186472354-186472088) | |
| 86-355, gnl|loxAfr1|scaffold_39133 (3740-4013) | |
| 86-355, gnl|loxAfr1|scaffold_39133 (3733-4023) | |
| 86-355, gnl|mm7|chr8 (44959856-44959583) | |
| 86-355, gnl|mm7|chr8 (44959862-44959572) | |
| 86-355, gnl|Mm7|chr8 (44959587-44959856) | |
| 86-355, gnl|monDom2|scaffold_9 (67349223-67349496) | |
| 86-355, gnl|monDom2|scaffold_9 (67349217-67349508) | |
| 86-355, gnl|oryCun1|scaffold_199135 (19881-19633) | |
| 86-355, gnl|oryCun1|scaffold_210403 (93469-93179) | |
| 86-355, gnl|panTro1|chr1 (36837765-36837999) | |
| 86-355, gnl|panTro1|chr3 (204680697-204680984) | |
| 86-355, gnl|rheMac2|chr1 (38713895-38714125) | |
| 86-355, gnl|rheMac2|chr5 (177270369-177270655) | |
| 86-355, gnl|rn3|chr16 (49384643-49384913) | |
| 86-355, gnl|rn3|chr16 (49384638-49384927) | |
| 86-355, gnl|xenTro1|scaffold_99 (2048460-2048747) | |
| 511-743, gnl|bosTau2|chr27 (9678839-9679075) | |
| 511-743, gnl|Hg17|chr4 (186459226-186458969) | |
| 511-743, gnl|Mm7|chr8 (44970459-44970716) |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 86-355, gnl|bosTau2|chr27 (9672617-9672883) | |
| 86-355, gnl|canFam2|chr16 (48395168-48394898) | |
| 86-355, gnl|canFam2|chr16 (48395174-48394885) | |
| 86-355, gnl|dasNov1|scaffold_75303 (4660-4390) | |
| 86-355, gnl|dasNov1|scaffold_75303 (4666-4376) | |
| 86-355, gnl|echTel1|scaffold_315568 (6540-6265) | |
| 86-355, gnl|echTel1|scaffold_315568 (6546-6252) | |
| 86-355, gnl|galGal2|chr4 (39956745-39956454) | |
| 86-355, gnl|hg17|chr1 (36008237-36008471) | |
| 86-355, gnl|hg17|chr4 (186472084-186472371) | |
| 86-355, gnl|Hg17|chr4 (186472354-186472088) | |
| 86-355, gnl|loxAfr1|scaffold_39133 (3740-4013) | |
| 86-355, gnl|loxAfr1|scaffold_39133 (3733-4023) | |
| 86-355, gnl|mm7|chr8 (44959856-44959583) | |
| 86-355, gnl|mm7|chr8 (44959862-44959572) | |
| 86-355, gnl|Mm7|chr8 (44959587-44959856) | |
| 86-355, gnl|monDom2|scaffold_9 (67349223-67349496) | |
| 86-355, gnl|monDom2|scaffold_9 (67349217-67349508) | |
| 86-355, gnl|oryCun1|scaffold_199135 (19881-19633) | |
| 86-355, gnl|oryCun1|scaffold_210403 (93469-93179) | |
| 86-355, gnl|panTro1|chr1 (36837765-36837999) | |
| 86-355, gnl|panTro1|chr3 (204680697-204680984) | |
| 86-355, gnl|rheMac2|chr1 (38713895-38714125) | |
| 86-355, gnl|rheMac2|chr5 (177270369-177270655) | |
| 86-355, gnl|rn3|chr16 (49384643-49384913) | |
| 86-355, gnl|rn3|chr16 (49384638-49384927) | |
| 86-355, gnl|xenTro1|scaffold_99 (2048460-2048747) | |
| 511-743, gnl|bosTau2|chr27 (9678839-9679075) | |
| 511-743, gnl|Hg17|chr4 (186459226-186458969) | |
| 511-743, gnl|Mm7|chr8 (44970459-44970716) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| tes (0.623441) | |
| bla (0.248694) | |
| fat (0.147427) | |
| med (0.116252) | |
| spc (0.113366) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tes (0.623441) | |
| bla (0.248694) | |
| fat (0.147427) | |
| med (0.116252) | |
| spc (0.113366) |