Non-Coding RNA Search

Ss1.1-rmed10c_c17.5

Sequence:


               
               GTTCGCTACCTAGAAGTGAAGACAGCAAAGGCGCGGGTGAGGCGGAGGGAAGGTGCGCTC
GATGATCTCCATGCCCTTGGTTATGGAATATTTGGCCAATCCTGGCGCACTCAGCTTTGC
TGCTGGAGTTGCCTGCGGCATGTGCCTGGGCTGGGGCCTCCGAGTACGCTTTGGGATGAT
CCCCAAGAGTTCGGTGAGCGAGACAGACACTGACACCGAAACTGAAGCAAGCATCTTAGG
AGAGAGTGGGGAGTACAAAATGATTCTCGTGGTTCGAAATGACTTAAAGATGGGAAAAGG
GAAGGTGGCTGCCCAGTGCTCTCATGCTGCTGTTTCTGCCTACAAGCAAATTCAAAGAAG
AAACCCTGAATTACTCCAACAGTGGGAATACTGTGGGCAGCCCAAAGTGGTGGTCAAAGC
TCCTGATGAAGAAACTCTGGTTGAATTATTGACCCATGCAAAAATGCTGGGACTGACTGT
AAGCTTAATCCAAGATGCTGGACGTACTCAGATTGCACCAGGCTCTCGAACTGTTCTAGG
AATTGGGCCAGGACCAGTAGACTTAATTGACAAGGTCACTGGTCACCTAAAACTTTACTA
GGTAAAATTTTGTATAATGATGGTCAACCCAAAACCACAAGTGTTTGACACTGTCAAAAT
CTAACAATAAAAGCTGAATTTCTCCAATTTAAGTATAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTCGCTACCTAGAAGTGAAGACAGCAAAGGCGCGGGTGAGGCGGAGGGAAGGTGCGCTC
GATGATCTCCATGCCCTTGGTTATGGAATATTTGGCCAATCCTGGCGCACTCAGCTTTGC
TGCTGGAGTTGCCTGCGGCATGTGCCTGGGCTGGGGCCTCCGAGTACGCTTTGGGATGAT
CCCCAAGAGTTCGGTGAGCGAGACAGACACTGACACCGAAACTGAAGCAAGCATCTTAGG
AGAGAGTGGGGAGTACAAAATGATTCTCGTGGTTCGAAATGACTTAAAGATGGGAAAAGG
GAAGGTGGCTGCCCAGTGCTCTCATGCTGCTGTTTCTGCCTACAAGCAAATTCAAAGAAG
AAACCCTGAATTACTCCAACAGTGGGAATACTGTGGGCAGCCCAAAGTGGTGGTCAAAGC
TCCTGATGAAGAAACTCTGGTTGAATTATTGACCCATGCAAAAATGCTGGGACTGACTGT
AAGCTTAATCCAAGATGCTGGACGTACTCAGATTGCACCAGGCTCTCGAACTGTTCTAGG
AATTGGGCCAGGACCAGTAGACTTAATTGACAAGGTCACTGGTCACCTAAAACTTTACTA
GGTAAAATTTTGTATAATGATGGTCAACCCAAAACCACAAGTGTTTGACACTGTCAAAAT
CTAACAATAAAAGCTGAATTTCTCCAATTTAAGTATAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57091197|ref|XP_537701.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57091197|ref|XP_537701.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               61-179, - strand, RNAz p=0.771568
               

               
               534-652, - strand, RNAz p=0.956693

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               61-179, - strand, RNAz p=0.771568
               

               
               534-652, - strand, RNAz p=0.956693

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               61-683, gnl|bosTau2|chr19 (4918760-4918141)
               

               
               61-683, gnl|Hg17|chr17 (55130122-55129502)
               

               
               61-683, gnl|Mm7|chr11 (86759466-86760085)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               61-683, gnl|bosTau2|chr19 (4918760-4918141)
               

               
               61-683, gnl|Hg17|chr17 (55130122-55129502)
               

               
               61-683, gnl|Mm7|chr11 (86759466-86760085)

Expressed library(ies): 14 entry(ies)

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Expressed library(ies): 14 entry(ies)

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               pro (0.512033)
               

               
               col (0.390016)
               

               
               ton (0.351)
               

               
               eye (0.170503)
               

               
               nco (0.161734)
               

               
               cli (0.152812)
               

               
               eli (0.151814)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               ste (0.135208)
               

               
               eru (0.120048)
               

               
               med (0.116252)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)
               

               
               col (0.390016)
               

               
               ton (0.351)
               

               
               eye (0.170503)
               

               
               nco (0.161734)
               

               
               cli (0.152812)
               

               
               eli (0.151814)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               ste (0.135208)
               

               
               eru (0.120048)
               

               
               med (0.116252)

	61-179, - strand, RNAz p=0.771568
	534-652, - strand, RNAz p=0.956693

	61-683, gnl\|bosTau2\|chr19 (4918760-4918141)
	61-683, gnl\|Hg17\|chr17 (55130122-55129502)
	61-683, gnl\|Mm7\|chr11 (86759466-86760085)

	pro (0.512033)
	col (0.390016)
	ton (0.351)
	eye (0.170503)
	nco (0.161734)
	cli (0.152812)
	eli (0.151814)
	lin (0.145603)
	hyp (0.142837)
	lnt (0.142308)
	hlv (0.139256)
	ste (0.135208)
	eru (0.120048)
	med (0.116252)