Ss1.1-rmed10c_f16.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTAGTGGCAGCTAAAACGCTCCCGGTCCGTTTATTGGCCACGCGAGGTGGTCGTCAAGAG ACTAGTTAGAGGGGAACATGGGAACCAGGGCGGGAAGTGCCCAGAAGCACCAGGGCTTCG GCAACAGGGTCTGTGTGCGGGAGACGCGCTGCACTGCAGGCGGCGGCCAAGCCCACCCGC CTGCGCAGCCCTGGCGGCTCAGTGCAGCTGCGCGTCCAGCTCGTACTTCTCACAGAACTT GTCGGTGAAGGGGATGCAGGTGAGGAACTCGCACCACTCACAGCGGACAGGGTGGACGTA GAAGAGGACCACCAGGCCAGCCAGGAGGCCCAGGAAGACCACCTGGAAGACGATGATCTG GCAGCGCTTGCGGTACAGGTCGAACTTGCCGAAGCTGATGTAGGGCAGGAAGGCGAAGGA GAGGAAGAGGCCACTGACAAAGCCCGAGATGTGGGCGAAGTTGTCGATCCAGGGCAGCAG CCCGAAGGCGAAGAGGAAGAGCACCACGGCAAGCAGCTTGAAGAAAGCGCGCCAGGGCCG GGCCAGGATCTGCCAGCTCTGGAAAAGCTCCACGAAGAGGCAGGCCAGGATGCCGAACTG CGAGCCGGCTGGGCCCACCTGGGGCCGGTATGGCAGGAAAATGGCACTGGCCAGATTACC AGTGACGCCACTCAGCAGGTAGATGATGGCTATGCGGTGCCAGCCTGCCAGCTTCTCCAG GTCCCGCAGGACAGTCATCTGGAAGCAGACAGACACCAGGCAGTGCAGGATCCCAGCGTG CAAGAAGAGGGACAGCCAGAGGCGGTAGAACTGGTCGGGCACCTCGGGGTTGAGGAAGGG CAGGAGCCCACACACGTCGTCCATGCAGTGCACCTGCGAGCAGAGCGTGGCCTCCTCGTG GAAGTAGCCCCTCATGAAGTCACAGTACTCCCGGGACGTGATCTCACACCTGCCCTTGGT GCCAATGCAGCAGGGCCGGCCCGTGATGACGCAGTCCATGTGGGGGTGGTTGGTGTGATT CCCAGCACTGCTTTTGGTGCAAATCGGCCACTTGGTAATGTCATCTGGCCACTCGTGGGG GTCCTCAGAGGAAGGCTCATCGCATACCCTGGGGTCCTGGTGGCAGACAGAGCCGAACTG CCTCTTGTGGCCGGCAAAGTCTGGGGCGCTGGGATGGAGGGGCCACTTCACCCACACTGC CAGCGTGGACGAGCACTCCTCCTCTGAGGTCTGCACGCAGCCAGACCGGTCGTTGCGCAC GCAGCAGGCCGAATGCTTCTCGCGCTCGCGCGCAGCGTGGATGAAACTATGCACCTGCGG GTCCTGGCGCATGCAGGGTGAGAACTTGGCACCCAGGTGAATGAGCGCCTCCGAGCTGGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTAGTGGCAGCTAAAACGCTCCCGGTCCGTTTATTGGCCACGCGAGGTGGTCGTCAAGAG ACTAGTTAGAGGGGAACATGGGAACCAGGGCGGGAAGTGCCCAGAAGCACCAGGGCTTCG GCAACAGGGTCTGTGTGCGGGAGACGCGCTGCACTGCAGGCGGCGGCCAAGCCCACCCGC CTGCGCAGCCCTGGCGGCTCAGTGCAGCTGCGCGTCCAGCTCGTACTTCTCACAGAACTT GTCGGTGAAGGGGATGCAGGTGAGGAACTCGCACCACTCACAGCGGACAGGGTGGACGTA GAAGAGGACCACCAGGCCAGCCAGGAGGCCCAGGAAGACCACCTGGAAGACGATGATCTG GCAGCGCTTGCGGTACAGGTCGAACTTGCCGAAGCTGATGTAGGGCAGGAAGGCGAAGGA GAGGAAGAGGCCACTGACAAAGCCCGAGATGTGGGCGAAGTTGTCGATCCAGGGCAGCAG CCCGAAGGCGAAGAGGAAGAGCACCACGGCAAGCAGCTTGAAGAAAGCGCGCCAGGGCCG GGCCAGGATCTGCCAGCTCTGGAAAAGCTCCACGAAGAGGCAGGCCAGGATGCCGAACTG CGAGCCGGCTGGGCCCACCTGGGGCCGGTATGGCAGGAAAATGGCACTGGCCAGATTACC AGTGACGCCACTCAGCAGGTAGATGATGGCTATGCGGTGCCAGCCTGCCAGCTTCTCCAG GTCCCGCAGGACAGTCATCTGGAAGCAGACAGACACCAGGCAGTGCAGGATCCCAGCGTG CAAGAAGAGGGACAGCCAGAGGCGGTAGAACTGGTCGGGCACCTCGGGGTTGAGGAAGGG CAGGAGCCCACACACGTCGTCCATGCAGTGCACCTGCGAGCAGAGCGTGGCCTCCTCGTG GAAGTAGCCCCTCATGAAGTCACAGTACTCCCGGGACGTGATCTCACACCTGCCCTTGGT GCCAATGCAGCAGGGCCGGCCCGTGATGACGCAGTCCATGTGGGGGTGGTTGGTGTGATT CCCAGCACTGCTTTTGGTGCAAATCGGCCACTTGGTAATGTCATCTGGCCACTCGTGGGG GTCCTCAGAGGAAGGCTCATCGCATACCCTGGGGTCCTGGTGGCAGACAGAGCCGAACTG CCTCTTGTGGCCGGCAAAGTCTGGGGCGCTGGGATGGAGGGGCCACTTCACCCACACTGC CAGCGTGGACGAGCACTCCTCCTCTGAGGTCTGCACGCAGCCAGACCGGTCGTTGCGCAC GCAGCAGGCCGAATGCTTCTCGCGCTCGCGCGCAGCGTGGATGAAACTATGCACCTGCGG GTCCTGGCGCATGCAGGGTGAGAACTTGGCACCCAGGTGAATGAGCGCCTCCGAGCTGGG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 54 entry(ies) | More info |
| Aligned organism(s): 54 entry(ies) | Help | Less info |
| 1-127, gnl|bosTau2|chr25 (2536425-2536552) | |
| 1-127, gnl|canFam2|chr6 (43474718-43474588) | |
| 1-127, gnl|dasNov1|scaffold_180620 (2843-2969) | |
| 1-127, gnl|echTel1|scaffold_300692 (6459-6324) | |
| 1-127, gnl|galGal2|chr14 (13832368-13832499) | |
| 1-127, gnl|hg17|chr16 (48061-48192) | |
| 1-127, gnl|Hg17|chr16 (48063-48190) | |
| 1-127, gnl|loxAfr1|scaffold_58983 (8758-8625) | |
| 1-127, gnl|mm7|chr11 (32161598-32161727) | |
| 1-127, gnl|Mm7|chr11 (32161600-32161725) | |
| 1-127, gnl|monDom2|scaffold_49 (7910773-7910908) | |
| 1-127, gnl|oryCun1|scaffold_95077 (972-842) | |
| 1-127, gnl|panTro1|chr18 (50995-51126) | |
| 1-127, gnl|rheMac2|chr20 (14164-14295) | |
| 1-127, gnl|rn3|chr10 (15667899-15667760) | |
| 170-629, gnl|bosTau2|chr19 (49201947-49201489) | |
| 170-629, gnl|Hg17|chr17 (71979292-71979737) | |
| 170-629, gnl|Mm7|chr11 (116708063-116708493) | |
| 772-887, gnl|bosTau2|chr19 (49200512-49200399) | |
| 772-887, gnl|Hg17|chr17 (71980681-71980795) | |
| 772-887, gnl|Mm7|chr11 (116709442-116709555) | |
| 1210-1372, gnl|bosTau2|chr25 (2539331-2539493) | |
| 1210-1372, gnl|canFam2|chr6 (43470861-43470691) | |
| 1210-1372, gnl|canFam2|chr6 (43470853-43470691) | |
| 1210-1372, gnl|danRer3|chr14 (51834870-51835038) | |
| 1210-1372, gnl|danRer3|chrUn (65537721-65537561) | |
| 1210-1372, gnl|dasNov1|scaffold_210048 (647-807) | |
| 1210-1372, gnl|dasNov1|scaffold_210048 (647-809) | |
| 1210-1372, gnl|echTel1|scaffold_302225 (342-512) | |
| 1210-1372, gnl|echTel1|scaffold_302225 (350-512) | |
| 1210-1372, gnl|fr1|chrUn (67609427-67609603) | |
| 1210-1372, gnl|fr1|chrUn (67609441-67609601) | |
| 1210-1372, gnl|galGal2|chr14 (13837563-13837733) | |
| 1210-1372, gnl|galGal2|chr14 (13837571-13837733) | |
| 1210-1372, gnl|hg17|chr16 (51105-51281) | |
| 1210-1372, gnl|Hg17|chr16 (51118-51280) | |
| 1210-1372, gnl|hg17|chr3 (14590372-14590534) | |
| 1210-1372, gnl|loxAfr1|scaffold_16320 (32960-33130) | |
| 1210-1372, gnl|loxAfr1|scaffold_16320 (32968-33130) | |
| 1210-1372, gnl|mm7|chr11 (32164626-32164796) | |
| 1210-1372, gnl|mm7|chr11 (32164634-32164794) | |
| 1210-1372, gnl|Mm7|chr11 (32164633-32164795) | |
| 1210-1372, gnl|monDom2|scaffold_49 (7916673-7916843) | |
| 1210-1372, gnl|monDom2|scaffold_49 (7916682-7916843) | |
| 1210-1372, gnl|panTro1|chr18 (54049-54225) | |
| 1210-1372, gnl|panTro1|chr2 (15189612-15189774) | |
| 1210-1372, gnl|rheMac2|chr11 (84263174-84263332) | |
| 1210-1372, gnl|rheMac2|chr20 (17519-17694) | |
| 1210-1372, gnl|rn3|chr10 (15664688-15664518) | |
| 1210-1372, gnl|rn3|chr10 (15664680-15664520) | |
| 1210-1372, gnl|tetNig1|chr3 (11781833-11781658) | |
| 1210-1372, gnl|tetNig1|chr3 (11781820-11781660) | |
| 1210-1372, gnl|xenTro1|scaffold_289 (160382-160218) | |
| 1210-1372, gnl|xenTro1|scaffold_289 (160380-160218) |
| Aligned organism(s): 54 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-127, gnl|bosTau2|chr25 (2536425-2536552) | |
| 1-127, gnl|canFam2|chr6 (43474718-43474588) | |
| 1-127, gnl|dasNov1|scaffold_180620 (2843-2969) | |
| 1-127, gnl|echTel1|scaffold_300692 (6459-6324) | |
| 1-127, gnl|galGal2|chr14 (13832368-13832499) | |
| 1-127, gnl|hg17|chr16 (48061-48192) | |
| 1-127, gnl|Hg17|chr16 (48063-48190) | |
| 1-127, gnl|loxAfr1|scaffold_58983 (8758-8625) | |
| 1-127, gnl|mm7|chr11 (32161598-32161727) | |
| 1-127, gnl|Mm7|chr11 (32161600-32161725) | |
| 1-127, gnl|monDom2|scaffold_49 (7910773-7910908) | |
| 1-127, gnl|oryCun1|scaffold_95077 (972-842) | |
| 1-127, gnl|panTro1|chr18 (50995-51126) | |
| 1-127, gnl|rheMac2|chr20 (14164-14295) | |
| 1-127, gnl|rn3|chr10 (15667899-15667760) | |
| 170-629, gnl|bosTau2|chr19 (49201947-49201489) | |
| 170-629, gnl|Hg17|chr17 (71979292-71979737) | |
| 170-629, gnl|Mm7|chr11 (116708063-116708493) | |
| 772-887, gnl|bosTau2|chr19 (49200512-49200399) | |
| 772-887, gnl|Hg17|chr17 (71980681-71980795) | |
| 772-887, gnl|Mm7|chr11 (116709442-116709555) | |
| 1210-1372, gnl|bosTau2|chr25 (2539331-2539493) | |
| 1210-1372, gnl|canFam2|chr6 (43470861-43470691) | |
| 1210-1372, gnl|canFam2|chr6 (43470853-43470691) | |
| 1210-1372, gnl|danRer3|chr14 (51834870-51835038) | |
| 1210-1372, gnl|danRer3|chrUn (65537721-65537561) | |
| 1210-1372, gnl|dasNov1|scaffold_210048 (647-807) | |
| 1210-1372, gnl|dasNov1|scaffold_210048 (647-809) | |
| 1210-1372, gnl|echTel1|scaffold_302225 (342-512) | |
| 1210-1372, gnl|echTel1|scaffold_302225 (350-512) | |
| 1210-1372, gnl|fr1|chrUn (67609427-67609603) | |
| 1210-1372, gnl|fr1|chrUn (67609441-67609601) | |
| 1210-1372, gnl|galGal2|chr14 (13837563-13837733) | |
| 1210-1372, gnl|galGal2|chr14 (13837571-13837733) | |
| 1210-1372, gnl|hg17|chr16 (51105-51281) | |
| 1210-1372, gnl|Hg17|chr16 (51118-51280) | |
| 1210-1372, gnl|hg17|chr3 (14590372-14590534) | |
| 1210-1372, gnl|loxAfr1|scaffold_16320 (32960-33130) | |
| 1210-1372, gnl|loxAfr1|scaffold_16320 (32968-33130) | |
| 1210-1372, gnl|mm7|chr11 (32164626-32164796) | |
| 1210-1372, gnl|mm7|chr11 (32164634-32164794) | |
| 1210-1372, gnl|Mm7|chr11 (32164633-32164795) | |
| 1210-1372, gnl|monDom2|scaffold_49 (7916673-7916843) | |
| 1210-1372, gnl|monDom2|scaffold_49 (7916682-7916843) | |
| 1210-1372, gnl|panTro1|chr18 (54049-54225) | |
| 1210-1372, gnl|panTro1|chr2 (15189612-15189774) | |
| 1210-1372, gnl|rheMac2|chr11 (84263174-84263332) | |
| 1210-1372, gnl|rheMac2|chr20 (17519-17694) | |
| 1210-1372, gnl|rn3|chr10 (15664688-15664518) | |
| 1210-1372, gnl|rn3|chr10 (15664680-15664520) | |
| 1210-1372, gnl|tetNig1|chr3 (11781833-11781658) | |
| 1210-1372, gnl|tetNig1|chr3 (11781820-11781660) | |
| 1210-1372, gnl|xenTro1|scaffold_289 (160382-160218) | |
| 1210-1372, gnl|xenTro1|scaffold_289 (160380-160218) |
| Expressed library(ies): 10 entry(ies) | More info |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
| ute (0.265569) | |
| eru (0.240096) | |
| ton (0.1755) | |
| duo (0.172801) | |
| nco (0.161734) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| med (0.116252) | |
| jej (0.0989218) | |
| eje (0.0988338) |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ute (0.265569) | |
| eru (0.240096) | |
| ton (0.1755) | |
| duo (0.172801) | |
| nco (0.161734) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| med (0.116252) | |
| jej (0.0989218) | |
| eje (0.0988338) |