Non-Coding RNA Search

Ss1.1-rmed10c_k17.5

Sequence:


               
               GTCAGATGGGAACTCATCAGGAGTTTGAACGTCTGTATCATGAACTTGGGGCCCTGAAGC
AACAGGCAAGGCAGGAGCAGGACAAACTGCAGAGGCATCAGACCTTCCTCCAGCTGCTTT
ACACCCTACAGGGTAAGCTGCTGTTCTCTGAGGCTGAGGCGGAGGCACAGATACCACAAG
AGACTGAACCTTCCTAAGGATAAGCCCCTGCAGCTGACCCAACCCCAGGAACAGAACCCT
CATGACATCATGGGAAGAGATGGAAGTGTGTCCTCTAAGGTCGACAGCCCCCAGCCCATT
GGAGATGCAAGCTTACCATGGCTTCCTGGGGCACAGCAACATGGGGAAGGATCCTAGAGC
AGGTCAGAATCCAGCTCAGGCCATGGTGTCCTTGGACTTCAGTCACAGAGGTCCCTCCTC
AGCTTCTGGAGAGAAGCAGGTCCCTCTAGCCGCAGCCTGCACCGCGATGTTGACATCACT
CTTCCAGTAGTGAATAAAATGATTTGGGCCTTGGTGTTATATTCTTCATCTTTAGAAACA
CCCAACAACTAGGGGGTAATTTAAGGGAACTATTTTGGTTAAAAGGCTTTTCAATAAGAT
AATATTTTCTGGTAGACATACTATAAAATTTAATTTCAATTGGGAAACTTAGGGTATTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCAGATGGGAACTCATCAGGAGTTTGAACGTCTGTATCATGAACTTGGGGCCCTGAAGC
AACAGGCAAGGCAGGAGCAGGACAAACTGCAGAGGCATCAGACCTTCCTCCAGCTGCTTT
ACACCCTACAGGGTAAGCTGCTGTTCTCTGAGGCTGAGGCGGAGGCACAGATACCACAAG
AGACTGAACCTTCCTAAGGATAAGCCCCTGCAGCTGACCCAACCCCAGGAACAGAACCCT
CATGACATCATGGGAAGAGATGGAAGTGTGTCCTCTAAGGTCGACAGCCCCCAGCCCATT
GGAGATGCAAGCTTACCATGGCTTCCTGGGGCACAGCAACATGGGGAAGGATCCTAGAGC
AGGTCAGAATCCAGCTCAGGCCATGGTGTCCTTGGACTTCAGTCACAGAGGTCCCTCCTC
AGCTTCTGGAGAGAAGCAGGTCCCTCTAGCCGCAGCCTGCACCGCGATGTTGACATCACT
CTTCCAGTAGTGAATAAAATGATTTGGGCCTTGGTGTTATATTCTTCATCTTTAGAAACA
CCCAACAACTAGGGGGTAATTTAAGGGAACTATTTTGGTTAAAAGGCTTTTCAATAAGAT
AATATTTTCTGGTAGACATACTATAAAATTTAATTTCAATTGGGAAACTTAGGGTATTGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               121-240, - strand, RNAz p=0.977202

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               121-240, - strand, RNAz p=0.977202

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-260, gnl|bosTau2|chr26 (1652539-1652287)
               

               
               1-260, gnl|Hg17|chr10 (57788665-57788228)
               


               
               426-651, gnl|bosTau2|chr26 (1602948-1603181)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-260, gnl|bosTau2|chr26 (1652539-1652287)
               

               
               1-260, gnl|Hg17|chr10 (57788665-57788228)
               


               
               426-651, gnl|bosTau2|chr26 (1602948-1603181)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               spl (0.143184)
               

               
               med (0.116252)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.143184)
               

               
               med (0.116252)

	1-260, gnl\|bosTau2\|chr26 (1652539-1652287)
	1-260, gnl\|Hg17\|chr10 (57788665-57788228)

	426-651, gnl\|bosTau2\|chr26 (1602948-1603181)