Ss1.1-rmed10c_n11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGCCTCAGATCTCTCGCTGTACGGAAGGGGGAGGCGCGAGCCAGGCCTGGGGAGTCAGCA CCCGCGGAAAGAGAGACAGGTCAGGCTACGAACTCCAATCCTCGCCGGCGCTTTCACGCC TCTTAACCGTTAGGGGCTCTGAGGGCCATGGCTGAGGTGCACGTGATTGGGCAGATCATG GGGGCCACCGGTTTCTCGGAAAGTAGCCTCTTCTGCAAGTGGGGCGTCCACACAGGGGCG GCATGGAAGCTCCTGTCAGGTGTGCGGGAGGGCCAAACCCAAGTGGACACCCCCCAGATA GGGGACATGGCTTACTGGTCCCACCCCATCGACCTGCACTTCGCCACCAAAGGCCTTCAA GGCTGGCCCCGGCTCCATCTCCAGGTGTGGTCCCAGGATAGCTTTGGCCGCTGCCAGCTT GCAGGCTACGGCTTTTGCCATGTGCCCAGCAGTCCAGGCACCCACCAGCTGGACTGCCCT ACGTGGCGGCCCCTGGGCAGCTGGCGGGAGCAGCTGGCGAGGGCCTTCGTGGGTGGTGGG CCTCAGCTGTTGCATGGGGACGCCATCTACAGTGGGGCTGATCGCTATCGCCTGCACACG GCCGCTGGTGGCACCGTGCACCTTGAGCTGGGCCTGCTGCTGCGCCACTTCGACCGCTAC GGGGTGGAATGCTGAAGGACCCTGCATCTATGGCTGGCCCCCAGCCATATCTCTGGACAC CCAGCAAGGGGCAGGATGGCCCAGTGGTCAGAATCCTGGGCTCTGGAGACTGTCAGACCA GACACTACCCAAGGCATGGTGCAGCTTCTGTCTTGAGTAGCACCTCAAGCCCAGTGGCTG CCCCTCCCAGGTTGGTTTTCCATCTTACAGTTGGGGCAGAAGCACATGGGCTCACAGGGG TTGGGTGCAAAGAAGCTGTTTGCACATGGAAGGACTCAATAAAAGAGAGCAGTTCTTTCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGCCTCAGATCTCTCGCTGTACGGAAGGGGGAGGCGCGAGCCAGGCCTGGGGAGTCAGCA CCCGCGGAAAGAGAGACAGGTCAGGCTACGAACTCCAATCCTCGCCGGCGCTTTCACGCC TCTTAACCGTTAGGGGCTCTGAGGGCCATGGCTGAGGTGCACGTGATTGGGCAGATCATG GGGGCCACCGGTTTCTCGGAAAGTAGCCTCTTCTGCAAGTGGGGCGTCCACACAGGGGCG GCATGGAAGCTCCTGTCAGGTGTGCGGGAGGGCCAAACCCAAGTGGACACCCCCCAGATA GGGGACATGGCTTACTGGTCCCACCCCATCGACCTGCACTTCGCCACCAAAGGCCTTCAA GGCTGGCCCCGGCTCCATCTCCAGGTGTGGTCCCAGGATAGCTTTGGCCGCTGCCAGCTT GCAGGCTACGGCTTTTGCCATGTGCCCAGCAGTCCAGGCACCCACCAGCTGGACTGCCCT ACGTGGCGGCCCCTGGGCAGCTGGCGGGAGCAGCTGGCGAGGGCCTTCGTGGGTGGTGGG CCTCAGCTGTTGCATGGGGACGCCATCTACAGTGGGGCTGATCGCTATCGCCTGCACACG GCCGCTGGTGGCACCGTGCACCTTGAGCTGGGCCTGCTGCTGCGCCACTTCGACCGCTAC GGGGTGGAATGCTGAAGGACCCTGCATCTATGGCTGGCCCCCAGCCATATCTCTGGACAC CCAGCAAGGGGCAGGATGGCCCAGTGGTCAGAATCCTGGGCTCTGGAGACTGTCAGACCA GACACTACCCAAGGCATGGTGCAGCTTCTGTCTTGAGTAGCACCTCAAGCCCAGTGGCTG CCCCTCCCAGGTTGGTTTTCCATCTTACAGTTGGGGCAGAAGCACATGGGCTCACAGGGG TTGGGTGCAAAGAAGCTGTTTGCACATGGAAGGACTCAATAAAAGAGAGCAGTTCTTTCA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 233-327, + strand, RNAz p=0.711432 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 233-327, + strand, RNAz p=0.711432 |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 2-144, gnl|bosTau2|chr18 (45830291-45830142) | |
| 2-144, gnl|canFam2|chr1 (115530932-115530101) | |
| 2-144, gnl|echTel1|scaffold_277434 (42114-41353) | |
| 2-144, gnl|hg17|chr19 (46561513-46562385) | |
| 2-144, gnl|Hg17|chr19 (46561847-46561702) | |
| 2-144, gnl|loxAfr1|scaffold_25817 (41422-40588) | |
| 2-144, gnl|mm7|chr7 (22454987-22454163) | |
| 2-144, gnl|Mm7|chr7 (22454689-22454816) | |
| 2-144, gnl|oryCun1|scaffold_141518 (5083-4258) | |
| 2-144, gnl|panTro1|chr20 (43549093-43549965) | |
| 2-144, gnl|rheMac2|chr19 (47756784-47757640) | |
| 2-144, gnl|rn3|chr1 (80966838-80966027) | |
| 233-362, gnl|bosTau2|chr18 (45826871-45826742) | |
| 233-362, gnl|canFam2|chr1 (115534050-115533896) | |
| 233-362, gnl|danRer3|chr21 (14299696-14299846) | |
| 233-362, gnl|echTel1|scaffold_86791 (1056-903) | |
| 233-362, gnl|fr1|chrUn (153837177-153837049) | |
| 233-362, gnl|hg17|chr19 (46555616-46555770) | |
| 233-362, gnl|Hg17|chr19 (46555770-46555641) | |
| 233-362, gnl|loxAfr1|scaffold_25817 (45384-45230) | |
| 233-362, gnl|mm7|chr7 (22457524-22457389) | |
| 233-362, gnl|Mm7|chr7 (22457387-22457516) | |
| 233-362, gnl|monDom2|scaffold_149 (875418-875562) | |
| 233-362, gnl|panTro1|chr20 (43543457-43543611) | |
| 233-362, gnl|rheMac2|chr19 (47750771-47750925) | |
| 233-362, gnl|rn3|chr1 (80969344-80969209) | |
| 233-362, gnl|tetNig1|chr11 (3538138-3538263) | |
| 233-362, gnl|xenTro1|scaffold_679 (336718-336847) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-144, gnl|bosTau2|chr18 (45830291-45830142) | |
| 2-144, gnl|canFam2|chr1 (115530932-115530101) | |
| 2-144, gnl|echTel1|scaffold_277434 (42114-41353) | |
| 2-144, gnl|hg17|chr19 (46561513-46562385) | |
| 2-144, gnl|Hg17|chr19 (46561847-46561702) | |
| 2-144, gnl|loxAfr1|scaffold_25817 (41422-40588) | |
| 2-144, gnl|mm7|chr7 (22454987-22454163) | |
| 2-144, gnl|Mm7|chr7 (22454689-22454816) | |
| 2-144, gnl|oryCun1|scaffold_141518 (5083-4258) | |
| 2-144, gnl|panTro1|chr20 (43549093-43549965) | |
| 2-144, gnl|rheMac2|chr19 (47756784-47757640) | |
| 2-144, gnl|rn3|chr1 (80966838-80966027) | |
| 233-362, gnl|bosTau2|chr18 (45826871-45826742) | |
| 233-362, gnl|canFam2|chr1 (115534050-115533896) | |
| 233-362, gnl|danRer3|chr21 (14299696-14299846) | |
| 233-362, gnl|echTel1|scaffold_86791 (1056-903) | |
| 233-362, gnl|fr1|chrUn (153837177-153837049) | |
| 233-362, gnl|hg17|chr19 (46555616-46555770) | |
| 233-362, gnl|Hg17|chr19 (46555770-46555641) | |
| 233-362, gnl|loxAfr1|scaffold_25817 (45384-45230) | |
| 233-362, gnl|mm7|chr7 (22457524-22457389) | |
| 233-362, gnl|Mm7|chr7 (22457387-22457516) | |
| 233-362, gnl|monDom2|scaffold_149 (875418-875562) | |
| 233-362, gnl|panTro1|chr20 (43543457-43543611) | |
| 233-362, gnl|rheMac2|chr19 (47750771-47750925) | |
| 233-362, gnl|rn3|chr1 (80969344-80969209) | |
| 233-362, gnl|tetNig1|chr11 (3538138-3538263) | |
| 233-362, gnl|xenTro1|scaffold_679 (336718-336847) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| nms (0.213858) | |
| nca (0.136874) | |
| pla (0.133672) | |
| med (0.116252) | |
| jca (0.11396) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nms (0.213858) | |
| nca (0.136874) | |
| pla (0.133672) | |
| med (0.116252) | |
| jca (0.11396) |