Non-Coding RNA Search

Ss1.1-rmed10c_o22.5

Sequence:


               
               AAGTTACTCAGTGTTTTAAAATGCACAAGATGTATTTGTTTCTCTTGGGTGAAAATCATG
CCTATCACTAGTATATGTTTGACATTTGTGATTCTTAAAATAGTATTGGATTTATGGCAT
GGTGGTGATGAAAATTAGTCCTTATGGCTACTTGTTAGTCACTAGAGAGAACTTGGAGAA
GGGAACAGAGTTTATGTCTTTGGCAGGGCAATGACTTACCCCTTCTTTCAACTAATCTTA
ATGGTAATTGTCCCTAGTCTAAGTAAATGAAGGGCGGACCATCCCTCAAACAGAGAACTT
TGGGGTATGAAACAGGTCTGAGGGCCTTTAACCATGGGGGGAAAAGGTGTTGGTATTACT
CATACAGCATAACCTGAGGTTGGAAAGGACCACTTGGGAGCCTGTAACCAAAACTAGAAG
GTAACTTCTGGAATGGATGGAGGTTCTCTTGAAACAATGCCAACGTAAATCTACCTCAGG
TAAGTAGTTAGAGTAACTTTTTTAAGATTTCAGACCAAATGAGACACCTGTATTCAGTCA
GTGTATTCCTGTGCTTTAATGTTTTTGTTTTCCCTTAACTCTTAAATAAACATTGTTCTG
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGTTACTCAGTGTTTTAAAATGCACAAGATGTATTTGTTTCTCTTGGGTGAAAATCATG
CCTATCACTAGTATATGTTTGACATTTGTGATTCTTAAAATAGTATTGGATTTATGGCAT
GGTGGTGATGAAAATTAGTCCTTATGGCTACTTGTTAGTCACTAGAGAGAACTTGGAGAA
GGGAACAGAGTTTATGTCTTTGGCAGGGCAATGACTTACCCCTTCTTTCAACTAATCTTA
ATGGTAATTGTCCCTAGTCTAAGTAAATGAAGGGCGGACCATCCCTCAAACAGAGAACTT
TGGGGTATGAAACAGGTCTGAGGGCCTTTAACCATGGGGGGAAAAGGTGTTGGTATTACT
CATACAGCATAACCTGAGGTTGGAAAGGACCACTTGGGAGCCTGTAACCAAAACTAGAAG
GTAACTTCTGGAATGGATGGAGGTTCTCTTGAAACAATGCCAACGTAAATCTACCTCAGG
TAAGTAGTTAGAGTAACTTTTTTAAGATTTCAGACCAAATGAGACACCTGTATTCAGTCA
GTGTATTCCTGTGCTTTAATGTTTTTGTTTTCCCTTAACTCTTAAATAAACATTGTTCTG
AAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               319-517, + strand, RNAz p=0.970316

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               319-517, + strand, RNAz p=0.970316

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               379-468, + strand, RNAmicro p=0.929195

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               379-468, + strand, RNAmicro p=0.929195

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               281-620, gnl|bosTau2|chr2 (25026443-25026778)
               

               
               281-620, gnl|Hg17|chr9 (97037515-97037174)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               281-620, gnl|bosTau2|chr2 (25026443-25026778)
               

               
               281-620, gnl|Hg17|chr9 (97037515-97037174)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               hea (0.204499)
               

               
               fhi (0.169578)
               

               
               ret (0.128733)
               

               
               med (0.116252)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (0.204499)
               

               
               fhi (0.169578)
               

               
               ret (0.128733)
               

               
               med (0.116252)

	281-620, gnl\|bosTau2\|chr2 (25026443-25026778)
	281-620, gnl\|Hg17\|chr9 (97037515-97037174)