Ss1.1-rmed11c_k17.5.5
|
CCTCCCCGGGCGCCTGAAGGAGACTTGGAGACTTCTGGGCCTCGCTGCTTGAGCGGTTGG
GAGTCGCCGCTGCTGCCACTGCCCGCACTCCATGAGGAAGATGCTCGCCGCCGTCTCCCG
CGTGTTGTCGGGCGTCGCCCAGAAGCCGGCAAGCAGAGTGCTGGTGGCGTCCCGTAACTT
TGCAAATGATGCTACATTTGAAATTAAGAAATGTGATCTTCACCGGCTGGAAGAGGGCCC
ACCTGTCACCACGGTGCTCACCAGGGAGGATGGGCTCAAGTACTACAGGATGATGCAGAC
TGTTCGCCGAATGGAGTTAAAAGCAGATCAGCTCTATAAACAGAAAATTATTCGTGGTTT
CTGTCACTTGTGTGATGGTCAGGAAGCTTGTTGCGTGGGCCTGGAGGCTGGCATAAACCC
TACGGACCATCTGATCACAGCCTACCGAGCTCATGGCTTTACCTTTACTCGTGGGCTTTC
TGTCCGGGAAATTCTTGCGGAACTTACAGGACGAAGAGGAGGTTGTGGTAAAGGAAAAGG
AGGATCGATGCATATGTATGCCAAGAACTTCTACGGGGGCAATGGCATTGTGGGAGCTCA
GGTGCCCCTGGGAGCTGGGATTGCTCTGGCCTGTAAGTATAATGGAAAAGATGAGGTCTG
TTTGACTTTGTATGGAGATGGTGCTGCTAATCAGGGTCAGATATTTGAAGCTTACAACAT
GGCAGCTTTGTGGAAATTGCCTTGTGTTTTCATCTGTGAGAATAATCGCTATGGGATGGG
AACGTCTGTGGAGAGAGCCGCAGCCAGCACTGACTACTATAAGAGAGGCGACTTCATTCC
TGGGCTGAGGGTAGATGGAATGGATATCCTGTGTGTCCGGGAGGCCACAAGGTTTGCAGC
TGCCTACTGTAGATCTGGAAAGGGGCCCATACTGATGGAGCTGCAGACTTACCGTTACCA
TGGACACAGTATGAGTGATCCCGGAGTCAGTTACCGTACACGAGAAGAAATTCAGGAAGT
AAGAAGTAAGAGTGACCCGATCATGCTTCTCAAGGATAGAATGGTGAACAGCAATCTTGC
CAGTGTTGAAGAATTAAAGGAAATCGATGTTGAAGTGAGGAAAGAAATTGAGGATGCTGC
ACAGTTTGCTACTGCTGATCCTGAACCACCTTTGGAAGAACTCGGCTATCACATCTACTG
CAACGACCCGCCTTTTGAAGTCCGGGGTGCAAACCAGTGGATCAAGTTTAAGTCCATCAG
TTAATGGGAGCTGGTTATACCTTCAGTGGGCTCTTTGGCAGCAACTGTAAGGAATGCTTT
GTGTCACCAACATTGTTGAGGAAAAGTGTGTAGATGAAGATAGTATAAATTGCATGTGGT
TTGTACAGTGTTGCATTAAAAGATGTTACTGTACACTTAGGTGTTAATAAGGATATCATA
AAGGTCATTTTAGATTTACATAGGTTTAAAAATAGGTAATAGAGTTGGCTTCACCCTCCT
TCACATTATTTCTTTAAGATAGTTTTGTTTGATTTTGTTGAATTTTGCTATTTTAACACA
TACGCACATACTTTTTAAGTGACTAAATCTTGAATGCCTGTTCAATTCTGCCACCTTTTT
GTGGGCATAGGGGATCATTCTCCTGTCCCTTGAAGTGCCCAGCAGCTAACCCAGTGTACC
TTAGTGTGCATGTTGGTGCTGAAGTCTGTTCTCACTGAACCATCATTTCTCCTTAATAAA
ACACAGTATTTAATTATAATGAGGCAGGGAGGGGGAGGACAATTCCATTTTAAAATAAGT
CTAGTTCATTTCAAAGACCAAATAACTTAGTTTCTCCATTTATACATTCAGTATAAATAC
GAAGCTATTTTCTAAATAGGTTTCTATTTTACATTCATATCAAACAATATCAAACATTAA
ATACAAGGCGTATTCTTAACATATTTTTCTTTTTCAAATTTTAAGTGCAATGCCAGTTAA
AAAATAAGATAGATGATAGTAGATAGTATAATCTAAAAGTGATTCCCAGCCTTTTTGTTA
TCTTAAACTCCTGTTGTTTGACCTCCTTAGTAAGCGTTTCTTCATTGAAGTAAGTTCATT
TTTAAGAATTTCATATTACTCTGGGATGTCAAAGACTAGTTTTTACAATCCCTCTTCTCA
CAATACATACAATTCTACTCACCTTTAAAACTTCAAGTTCTAATTGTTCATTGAACAGTG
GTGTCTCCCTTGTGTAAAAATGCAGCGGAATTCATGTGTATGTTAACAGAAGCTTCAACC
ACAAAGATGTTCACTCTTTGCTCCCTCTGCCCCCGAGCTGAGCTGATTACGCCTCATCTT
GGGTTGTCGGGGCCCCCTGAGCCTGTCTTCTGTACTGGGACACTGCAGTCCAGAGCCTGC
AGAGGAGGCCACCACTACAAAACAAATAGGAAGCGGCTTTAGAGTTGTAGGCAAAGATAA
CTTCAAGGTGACACCACAAAATACTACTTTAGGAGCCCTTACAGAAAAGCTATACAGTAT
CTACTTCTTGACTTGTCTAGACTTGCTGTCTGGTCTTAAAAGTGCAATCCCTAACTTAAA
AATTTAATACTGTCCTTGCCTCGCTCAGTGGGTTAAGGATCTGGTGTGGCCTGCAGCTCT
GATTTGATCCCTGGCCCAGGACTTCTGCATGCCACAGGTGTGCACATAAAACAAAAACCA
AAATAGGAATGTGAACTCTTTACATATGGAGGTGACCCTTGTGCCCTAGCAGGAGTGGGA
CATGGCCTTAGAGGTAAGTAAGTACAGACGTGCTGGTGGCTCTGTGCAGAGCAGGTTATT
TAAGAGGACATGGGTTCACAATCGTAAGGTGCAATGTAGAGAAAGAAGGGTTTGGGTGGA
GCACGCTGCCATCTCATGTCCTTCCTCACTCCACTCCTAGCCAGGGCCTGGCTGGAAGTC
TTAACTTTTCCTACTGGTCCTTTAGCCTCTGCCCCCTCTGGGCTTTTCCCCAACTTTAAC
CTTGGAGAGCTCCAGAGTTGGGAGTGAGGTTGGGTAATTTTTGTTTTCTGACTAAGCCAT
AGGAAAGGGAATTAACTTCAATGAAGAGGGAGGGTGGGAGTTTCTGGCACTTTTGCTACT
GCGCCTATTTTATTTTTTGTATTTTTAGGGCCACGCTCATGGCATTGGACCCAGGCTAGG
GGTCCAATTGGAGCTACAGCTGCTGGCCTACACCAGAGCCACAGCAACGTAAATCCAAGC
CGTGTCTGCAACCTACACCACATCTGATGGCAAGGCTGGGTCCTTAACCCACTGAGTGAG
GCCAGGGATCGTACCCGCATCTTCATGGCTCCTAGTTGGGTTCGTTAACCACTGAGCCAC
AACAGGAACTCCATCTATCGCCTGTTTTAAAAGCCTAACTCGTCACCCCAAAAAAGCCAT
TTTCGGTCACACAGTGTTTTGAGGTGGTTCTTACCGTAGTCTAAGGTACCTGAGGTCTTC
CTTAGTGATGTCATTAAGAATATCAGAAAGTGTGTAACCCTCTTCGAGGATCTGAAACAA
GGATCACATACATCAAGGGCTAAGTAGCTTTGTAATAAGAGCATAGGAATGGTTTGTCTG
GTTATGCATTTACCTTTTCGATTGTCTTTGTATCCGCTCCTTGCAGTTGCAACCAGTCAA
CAAGCTCTTGATCTGTTCTCTGTCCGTGAGACCCAGGAGGGGACGCTGAGCTCGCTGTAG
TCTCTGTAATGATGAGAAATTTGTTTTGTTATATACTGATGTGTAACAGTAAGACTTCAA
GTAACAAGTTGGATGAAATAAACTATTCCAGGATGTAAAAAAAAAAAAAAAAAAAAAAAA |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CCTCCCCGGGCGCCTGAAGGAGACTTGGAGACTTCTGGGCCTCGCTGCTTGAGCGGTTGG
GAGTCGCCGCTGCTGCCACTGCCCGCACTCCATGAGGAAGATGCTCGCCGCCGTCTCCCG
CGTGTTGTCGGGCGTCGCCCAGAAGCCGGCAAGCAGAGTGCTGGTGGCGTCCCGTAACTT
TGCAAATGATGCTACATTTGAAATTAAGAAATGTGATCTTCACCGGCTGGAAGAGGGCCC
ACCTGTCACCACGGTGCTCACCAGGGAGGATGGGCTCAAGTACTACAGGATGATGCAGAC
TGTTCGCCGAATGGAGTTAAAAGCAGATCAGCTCTATAAACAGAAAATTATTCGTGGTTT
CTGTCACTTGTGTGATGGTCAGGAAGCTTGTTGCGTGGGCCTGGAGGCTGGCATAAACCC
TACGGACCATCTGATCACAGCCTACCGAGCTCATGGCTTTACCTTTACTCGTGGGCTTTC
TGTCCGGGAAATTCTTGCGGAACTTACAGGACGAAGAGGAGGTTGTGGTAAAGGAAAAGG
AGGATCGATGCATATGTATGCCAAGAACTTCTACGGGGGCAATGGCATTGTGGGAGCTCA
GGTGCCCCTGGGAGCTGGGATTGCTCTGGCCTGTAAGTATAATGGAAAAGATGAGGTCTG
TTTGACTTTGTATGGAGATGGTGCTGCTAATCAGGGTCAGATATTTGAAGCTTACAACAT
GGCAGCTTTGTGGAAATTGCCTTGTGTTTTCATCTGTGAGAATAATCGCTATGGGATGGG
AACGTCTGTGGAGAGAGCCGCAGCCAGCACTGACTACTATAAGAGAGGCGACTTCATTCC
TGGGCTGAGGGTAGATGGAATGGATATCCTGTGTGTCCGGGAGGCCACAAGGTTTGCAGC
TGCCTACTGTAGATCTGGAAAGGGGCCCATACTGATGGAGCTGCAGACTTACCGTTACCA
TGGACACAGTATGAGTGATCCCGGAGTCAGTTACCGTACACGAGAAGAAATTCAGGAAGT
AAGAAGTAAGAGTGACCCGATCATGCTTCTCAAGGATAGAATGGTGAACAGCAATCTTGC
CAGTGTTGAAGAATTAAAGGAAATCGATGTTGAAGTGAGGAAAGAAATTGAGGATGCTGC
ACAGTTTGCTACTGCTGATCCTGAACCACCTTTGGAAGAACTCGGCTATCACATCTACTG
CAACGACCCGCCTTTTGAAGTCCGGGGTGCAAACCAGTGGATCAAGTTTAAGTCCATCAG
TTAATGGGAGCTGGTTATACCTTCAGTGGGCTCTTTGGCAGCAACTGTAAGGAATGCTTT
GTGTCACCAACATTGTTGAGGAAAAGTGTGTAGATGAAGATAGTATAAATTGCATGTGGT
TTGTACAGTGTTGCATTAAAAGATGTTACTGTACACTTAGGTGTTAATAAGGATATCATA
AAGGTCATTTTAGATTTACATAGGTTTAAAAATAGGTAATAGAGTTGGCTTCACCCTCCT
TCACATTATTTCTTTAAGATAGTTTTGTTTGATTTTGTTGAATTTTGCTATTTTAACACA
TACGCACATACTTTTTAAGTGACTAAATCTTGAATGCCTGTTCAATTCTGCCACCTTTTT
GTGGGCATAGGGGATCATTCTCCTGTCCCTTGAAGTGCCCAGCAGCTAACCCAGTGTACC
TTAGTGTGCATGTTGGTGCTGAAGTCTGTTCTCACTGAACCATCATTTCTCCTTAATAAA
ACACAGTATTTAATTATAATGAGGCAGGGAGGGGGAGGACAATTCCATTTTAAAATAAGT
CTAGTTCATTTCAAAGACCAAATAACTTAGTTTCTCCATTTATACATTCAGTATAAATAC
GAAGCTATTTTCTAAATAGGTTTCTATTTTACATTCATATCAAACAATATCAAACATTAA
ATACAAGGCGTATTCTTAACATATTTTTCTTTTTCAAATTTTAAGTGCAATGCCAGTTAA
AAAATAAGATAGATGATAGTAGATAGTATAATCTAAAAGTGATTCCCAGCCTTTTTGTTA
TCTTAAACTCCTGTTGTTTGACCTCCTTAGTAAGCGTTTCTTCATTGAAGTAAGTTCATT
TTTAAGAATTTCATATTACTCTGGGATGTCAAAGACTAGTTTTTACAATCCCTCTTCTCA
CAATACATACAATTCTACTCACCTTTAAAACTTCAAGTTCTAATTGTTCATTGAACAGTG
GTGTCTCCCTTGTGTAAAAATGCAGCGGAATTCATGTGTATGTTAACAGAAGCTTCAACC
ACAAAGATGTTCACTCTTTGCTCCCTCTGCCCCCGAGCTGAGCTGATTACGCCTCATCTT
GGGTTGTCGGGGCCCCCTGAGCCTGTCTTCTGTACTGGGACACTGCAGTCCAGAGCCTGC
AGAGGAGGCCACCACTACAAAACAAATAGGAAGCGGCTTTAGAGTTGTAGGCAAAGATAA
CTTCAAGGTGACACCACAAAATACTACTTTAGGAGCCCTTACAGAAAAGCTATACAGTAT
CTACTTCTTGACTTGTCTAGACTTGCTGTCTGGTCTTAAAAGTGCAATCCCTAACTTAAA
AATTTAATACTGTCCTTGCCTCGCTCAGTGGGTTAAGGATCTGGTGTGGCCTGCAGCTCT
GATTTGATCCCTGGCCCAGGACTTCTGCATGCCACAGGTGTGCACATAAAACAAAAACCA
AAATAGGAATGTGAACTCTTTACATATGGAGGTGACCCTTGTGCCCTAGCAGGAGTGGGA
CATGGCCTTAGAGGTAAGTAAGTACAGACGTGCTGGTGGCTCTGTGCAGAGCAGGTTATT
TAAGAGGACATGGGTTCACAATCGTAAGGTGCAATGTAGAGAAAGAAGGGTTTGGGTGGA
GCACGCTGCCATCTCATGTCCTTCCTCACTCCACTCCTAGCCAGGGCCTGGCTGGAAGTC
TTAACTTTTCCTACTGGTCCTTTAGCCTCTGCCCCCTCTGGGCTTTTCCCCAACTTTAAC
CTTGGAGAGCTCCAGAGTTGGGAGTGAGGTTGGGTAATTTTTGTTTTCTGACTAAGCCAT
AGGAAAGGGAATTAACTTCAATGAAGAGGGAGGGTGGGAGTTTCTGGCACTTTTGCTACT
GCGCCTATTTTATTTTTTGTATTTTTAGGGCCACGCTCATGGCATTGGACCCAGGCTAGG
GGTCCAATTGGAGCTACAGCTGCTGGCCTACACCAGAGCCACAGCAACGTAAATCCAAGC
CGTGTCTGCAACCTACACCACATCTGATGGCAAGGCTGGGTCCTTAACCCACTGAGTGAG
GCCAGGGATCGTACCCGCATCTTCATGGCTCCTAGTTGGGTTCGTTAACCACTGAGCCAC
AACAGGAACTCCATCTATCGCCTGTTTTAAAAGCCTAACTCGTCACCCCAAAAAAGCCAT
TTTCGGTCACACAGTGTTTTGAGGTGGTTCTTACCGTAGTCTAAGGTACCTGAGGTCTTC
CTTAGTGATGTCATTAAGAATATCAGAAAGTGTGTAACCCTCTTCGAGGATCTGAAACAA
GGATCACATACATCAAGGGCTAAGTAGCTTTGTAATAAGAGCATAGGAATGGTTTGTCTG
GTTATGCATTTACCTTTTCGATTGTCTTTGTATCCGCTCCTTGCAGTTGCAACCAGTCAA
CAAGCTCTTGATCTGTTCTCTGTCCGTGAGACCCAGGAGGGGACGCTGAGCTCGCTGTAG
TCTCTGTAATGATGAGAAATTTGTTTTGTTATATACTGATGTGTAACAGTAAGACTTCAA
GTAACAAGTTGGATGAAATAAACTATTCCAGGATGTAAAAAAAAAAAAAAAAAAAAAAAA |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
161-321, gnl|bosTau2|chr22 (31563990-31563834) |
|
161-321, gnl|canFam2|chr20 (35698559-35698444) |
|
161-321, gnl|danRer3|chr24 (22607293-22607409) |
|
161-321, gnl|dasNov1|scaffold_90601 (10564-10452) |
|
161-321, gnl|echTel1|scaffold_203983 (5770-5682) |
|
161-321, gnl|fr1|chrUn (4791430-4791544) |
|
161-321, gnl|hg17|chr3 (57762038-57762153) |
|
161-321, gnl|Hg17|chr3 (57762195-57762037) |
|
161-321, gnl|loxAfr1|scaffold_1461 (79137-79251) |
|
161-321, gnl|mm7|chr10 (28704012-28704130) |
|
161-321, gnl|Mm7|chr10 (28704173-28704011) |
|
161-321, gnl|monDom2|scaffold_20 (46962965-46962862) |
|
161-321, gnl|oryCun1|scaffold_196955 (148725-148838) |
|
161-321, gnl|panTro1|chr2 (59511948-59512063) |
|
161-321, gnl|rheMac2|chr2 (78589418-78589303) |
|
161-321, gnl|rn3|chr16 (87946790-87946906) |
| |
|
326-1270, gnl|bosTau2|chr14 (29110351-29111295) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
161-321, gnl|bosTau2|chr22 (31563990-31563834) |
|
161-321, gnl|canFam2|chr20 (35698559-35698444) |
|
161-321, gnl|danRer3|chr24 (22607293-22607409) |
|
161-321, gnl|dasNov1|scaffold_90601 (10564-10452) |
|
161-321, gnl|echTel1|scaffold_203983 (5770-5682) |
|
161-321, gnl|fr1|chrUn (4791430-4791544) |
|
161-321, gnl|hg17|chr3 (57762038-57762153) |
|
161-321, gnl|Hg17|chr3 (57762195-57762037) |
|
161-321, gnl|loxAfr1|scaffold_1461 (79137-79251) |
|
161-321, gnl|mm7|chr10 (28704012-28704130) |
|
161-321, gnl|Mm7|chr10 (28704173-28704011) |
|
161-321, gnl|monDom2|scaffold_20 (46962965-46962862) |
|
161-321, gnl|oryCun1|scaffold_196955 (148725-148838) |
|
161-321, gnl|panTro1|chr2 (59511948-59512063) |
|
161-321, gnl|rheMac2|chr2 (78589418-78589303) |
|
161-321, gnl|rn3|chr16 (87946790-87946906) |
| |
|
326-1270, gnl|bosTau2|chr14 (29110351-29111295) |
|
hea (3.27198) |
|
ssp (2.71039) |
|
isp (2.25564) |
|
bfe (1.79829) |
|
kid (1.55682) |
|
pro (1.5361) |
|
nms (1.28315) |
|
hlv (1.25331) |
|
cbe (0.956938) |
|
ste (0.946458) |
|
sme (0.91631) |
|
sto (0.899119) |
|
che (0.817884) |
|
mgp (0.692042) |
|
vin (0.665115) |
|
mas (0.630915) |
|
thg (0.507164) |
|
tbr (0.462535) |
|
spc (0.453463) |
|
fat (0.442282) |
|
csk (0.422238) |
|
aor (0.390549) |
|
cmu (0.372787) |
|
nep (0.36785) |
|
sag (0.36543) |
|
gul (0.355177) |
|
med (0.348756) |
|
duo (0.345602) |
|
cki (0.330469) |
|
mga (0.32041) |
|
ski (0.29347) |
|
lin (0.291206) |
|
ldo (0.291008) |
|
fce (0.271592) |
|
lyg (0.266205) |
|
ute (0.265569) |
|
ova (0.258264) |
|
sug (0.254582) |
|
tes (0.207814) |
|
col (0.195008) |
|
fty (0.17584) |
|
fbs (0.175346) |
|
rec (0.17307) |
|
mcp (0.170648) |
|
eye (0.170503) |
|
fhi (0.169578) |
|
nje (0.16592) |
|
cje (0.165235) |
|
lun (0.150489) |
|
lnt (0.142308) |
|
nca (0.136874) |
|
pla (0.133672) |
|
ret (0.128733) |
|
ese (0.126502) |
|
bla (0.124347) |
|
eru (0.120048) |
|
ebs (0.118301) |
|
jej (0.0989218) |
|
hea (3.27198) |
|
ssp (2.71039) |
|
isp (2.25564) |
|
bfe (1.79829) |
|
kid (1.55682) |
|
pro (1.5361) |
|
nms (1.28315) |
|
hlv (1.25331) |
|
cbe (0.956938) |
|
ste (0.946458) |
|
sme (0.91631) |
|
sto (0.899119) |
|
che (0.817884) |
|
mgp (0.692042) |
|
vin (0.665115) |
|
mas (0.630915) |
|
thg (0.507164) |
|
tbr (0.462535) |
|
spc (0.453463) |
|
fat (0.442282) |
|
csk (0.422238) |
|
aor (0.390549) |
|
cmu (0.372787) |
|
nep (0.36785) |
|
sag (0.36543) |
|
gul (0.355177) |
|
med (0.348756) |
|
duo (0.345602) |
|
cki (0.330469) |
|
mga (0.32041) |
|
ski (0.29347) |
|
lin (0.291206) |
|
ldo (0.291008) |
|
fce (0.271592) |
|
lyg (0.266205) |
|
ute (0.265569) |
|
ova (0.258264) |
|
sug (0.254582) |
|
tes (0.207814) |
|
col (0.195008) |
|
fty (0.17584) |
|
fbs (0.175346) |
|
rec (0.17307) |
|
mcp (0.170648) |
|
eye (0.170503) |
|
fhi (0.169578) |
|
nje (0.16592) |
|
cje (0.165235) |
|
lun (0.150489) |
|
lnt (0.142308) |
|
nca (0.136874) |
|
pla (0.133672) |
|
ret (0.128733) |
|
ese (0.126502) |
|
bla (0.124347) |
|
eru (0.120048) |
|
ebs (0.118301) |
|
jej (0.0989218) |
