Ss1.1-rmed12c_g2.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGGACTCCCGGGGGAGCAGCGGCCCAACCCAGATCAACCAGGTGGTGAGTCATCCAAAC CAGCCCCTCACCATCACCGCCCATGACGACAGAGGCATCCGCTTCCTGGACAACCGGACA GGGAAATCCGTGCACTCCATGGTTGCCCACCTGGATGCAGTCACCTGCCTAGCCGTGGAC CCCAATGGTGTCTTCCTGATGTCAGGAAGCCATGACTGCTCCCTGCGACTGTGGAGCCTG GACAATAAAACGTGCGTTCAGGAGATCACGGCCCACCGCAAGAAGCACGAGGAGGCCATC CACGCTGTCGCCTGCCACCCTAGCAAGGCCCTCATTGCCAGTGCTGGCGCCGACGCCCTG GCCAAGGTCTTCGTATGATGCCCACCCGGCCCCGCCCAGGCCGCCACACTGGCTGCGGAG CGGGCCGGGCAGGTGGGACTGAGGTGACTCCCAGCCTCAGTCTGGAGGCCCAGAGGCCTG GAGGCCCGGCTTCTTCCTGCCTGCCTTGGAGCCTGGTGGTGCTAAGGGCCCTTTCCCCAG GAGGCCCTCCCCACGGCCCTTCCCCGAGCCTCCAGCCGGGGCGGCAGCCTCCTTCAGGAA TCGCCCTCCAGGATGGCCTCTGGGAATTTTCTCTTCACCCTGACACCCTCTCCGGGTCTC TGAGCTGCCTTCTCGGGGGCCACACAACCAGGGCTGGGTGTCCTTGGGGATCAGCTTTTC CAAGATGCCAGAAGGTGCCAGGTTCTCTCTTTGAACCCCTGACCCTCCTCCCCACCTCCA TGGACCCAGGTGGGAGTTGTGCTGGGAGGAGCCCGAGTCCCCCATTCGCTCAGAGGGGGC TGGGGCCGGGCAGCCAGCTGCCGGCAGGGTTGCTGGCAAGACAACCCCAGAGGCGCGCCC AGCAAACCGCCTCCCCCTCCAGCTTCCTCAGCACAGCTTTCCAGACACTACCCATGGCCT CTGGGGCCGGTCACTGCCTGGGGAGCAGGTGATGCCCTCGGGGGAGGTGCCCGCCCCTAC CTCCCCCAACCCTCCTCCAAGGGCAGCTCCCCCAACCCCCATGGGGTCACCCATGGGGAG AGATGGCCTTCTCTTGCCCCTCCCAGGGGCATGGAGGGTGGAGTGGGGTCCCCCAGTCCC CCATAACTCCCTGTATATCTGTATAAATAAATGGGATTTTAATGGAGCCCCACCCCCACC CATGTCGTTATCACTGTGTGATAGTCTGTCGTCTCTGCTCCTGGCCCTGCCCTTCACGCT CTTCCTCTATTTATTTCACTCTTTTTTGGGTTCCACCCTGTGCCCTCAGCCCCCTTCCAG GTTCCTGTTTATAAGCCCCATCCCTTCTGCCCTGGACTTGTTGTATGTGAAACTTGTCTC AATAAACCCTTTGGAGTAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGGACTCCCGGGGGAGCAGCGGCCCAACCCAGATCAACCAGGTGGTGAGTCATCCAAAC CAGCCCCTCACCATCACCGCCCATGACGACAGAGGCATCCGCTTCCTGGACAACCGGACA GGGAAATCCGTGCACTCCATGGTTGCCCACCTGGATGCAGTCACCTGCCTAGCCGTGGAC CCCAATGGTGTCTTCCTGATGTCAGGAAGCCATGACTGCTCCCTGCGACTGTGGAGCCTG GACAATAAAACGTGCGTTCAGGAGATCACGGCCCACCGCAAGAAGCACGAGGAGGCCATC CACGCTGTCGCCTGCCACCCTAGCAAGGCCCTCATTGCCAGTGCTGGCGCCGACGCCCTG GCCAAGGTCTTCGTATGATGCCCACCCGGCCCCGCCCAGGCCGCCACACTGGCTGCGGAG CGGGCCGGGCAGGTGGGACTGAGGTGACTCCCAGCCTCAGTCTGGAGGCCCAGAGGCCTG GAGGCCCGGCTTCTTCCTGCCTGCCTTGGAGCCTGGTGGTGCTAAGGGCCCTTTCCCCAG GAGGCCCTCCCCACGGCCCTTCCCCGAGCCTCCAGCCGGGGCGGCAGCCTCCTTCAGGAA TCGCCCTCCAGGATGGCCTCTGGGAATTTTCTCTTCACCCTGACACCCTCTCCGGGTCTC TGAGCTGCCTTCTCGGGGGCCACACAACCAGGGCTGGGTGTCCTTGGGGATCAGCTTTTC CAAGATGCCAGAAGGTGCCAGGTTCTCTCTTTGAACCCCTGACCCTCCTCCCCACCTCCA TGGACCCAGGTGGGAGTTGTGCTGGGAGGAGCCCGAGTCCCCCATTCGCTCAGAGGGGGC TGGGGCCGGGCAGCCAGCTGCCGGCAGGGTTGCTGGCAAGACAACCCCAGAGGCGCGCCC AGCAAACCGCCTCCCCCTCCAGCTTCCTCAGCACAGCTTTCCAGACACTACCCATGGCCT CTGGGGCCGGTCACTGCCTGGGGAGCAGGTGATGCCCTCGGGGGAGGTGCCCGCCCCTAC CTCCCCCAACCCTCCTCCAAGGGCAGCTCCCCCAACCCCCATGGGGTCACCCATGGGGAG AGATGGCCTTCTCTTGCCCCTCCCAGGGGCATGGAGGGTGGAGTGGGGTCCCCCAGTCCC CCATAACTCCCTGTATATCTGTATAAATAAATGGGATTTTAATGGAGCCCCACCCCCACC CATGTCGTTATCACTGTGTGATAGTCTGTCGTCTCTGCTCCTGGCCCTGCCCTTCACGCT CTTCCTCTATTTATTTCACTCTTTTTTGGGTTCCACCCTGTGCCCTCAGCCCCCTTCCAG GTTCCTGTTTATAAGCCCCATCCCTTCTGCCCTGGACTTGTTGTATGTGAAACTTGTCTC AATAAACCCTTTGGAGTAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 481-717, - strand, RNAz p=0.999981 | |
| 758-1216, - strand, RNAz p=0.999493 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 481-717, - strand, RNAz p=0.999981 | |
| 758-1216, - strand, RNAz p=0.999493 |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 22-122, gnl|bosTau2|chr18 (49725218-49725318) | |
| 22-122, gnl|canFam2|chr1 (112086697-112086586) | |
| 22-122, gnl|danRer3|chrUn (49989351-49989240) | |
| 22-122, gnl|dasNov1|scaffold_188124 (384-291) | |
| 22-122, gnl|echTel1|scaffold_293495 (6350-6461) | |
| 22-122, gnl|fr1|chrUn (79365854-79365945) | |
| 22-122, gnl|hg17|chr19 (51917337-51917448) | |
| 22-122, gnl|Hg17|chr19 (51917438-51917338) | |
| 22-122, gnl|loxAfr1|scaffold_24302 (14345-14456) | |
| 22-122, gnl|mm7|chr7 (14602061-14601950) | |
| 22-122, gnl|Mm7|chr7 (14601958-14602058) | |
| 22-122, gnl|monDom2|scaffold_149 (1824152-1824042) | |
| 22-122, gnl|oryCun1|scaffold_209535 (92648-92537) | |
| 22-122, gnl|panTro1|chr20 (49213861-49213972) | |
| 22-122, gnl|rheMac2|chr19 (53069487-53069598) | |
| 22-122, gnl|rn3|chr1 (77241705-77241594) | |
| 22-122, gnl|tetNig1|chr16 (1353272-1353363) | |
| 211-378, gnl|bosTau2|chr19 (36311990-36311823) | |
| 211-378, gnl|canFam2|chr17 (32376959-32377155) | |
| 211-378, gnl|danRer3|chr9 (5357264-5357090) | |
| 211-378, gnl|dasNov1|scaffold_25979 (12445-12640) | |
| 211-378, gnl|echTel1|scaffold_322978 (81364-81558) | |
| 211-378, gnl|fr1|chrUn (15192223-15192413) | |
| 211-378, gnl|galGal2|chr3 (28431354-28431158) | |
| 211-378, gnl|hg17|chr2 (36988228-36988424) | |
| 211-378, gnl|Hg17|chr2 (36988417-36988250) | |
| 211-378, gnl|loxAfr1|scaffold_20133 (22800-22996) | |
| 211-378, gnl|mm7|chr17 (76956022-76956218) | |
| 211-378, gnl|Mm7|chr17 (76956211-76956044) | |
| 211-378, gnl|monDom2|scaffold_1 (135148200-135148004) | |
| 211-378, gnl|oryCun1|scaffold_211919 (3513-3317) | |
| 211-378, gnl|panTro1|chr12 (38442927-38443123) | |
| 211-378, gnl|rheMac2|chr13 (36827560-36827756) | |
| 211-378, gnl|rn3|chr6 (1429120-1429316) | |
| 211-378, gnl|tetNig1|chr17 (2161708-2161512) | |
| 211-378, gnl|xenTro1|scaffold_303 (1289836-1290029) | |
| 442-1290, gnl|bosTau2|chr18 (49726753-49727586) | |
| 442-1290, gnl|Hg17|chr19 (51915437-51914721) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 22-122, gnl|bosTau2|chr18 (49725218-49725318) | |
| 22-122, gnl|canFam2|chr1 (112086697-112086586) | |
| 22-122, gnl|danRer3|chrUn (49989351-49989240) | |
| 22-122, gnl|dasNov1|scaffold_188124 (384-291) | |
| 22-122, gnl|echTel1|scaffold_293495 (6350-6461) | |
| 22-122, gnl|fr1|chrUn (79365854-79365945) | |
| 22-122, gnl|hg17|chr19 (51917337-51917448) | |
| 22-122, gnl|Hg17|chr19 (51917438-51917338) | |
| 22-122, gnl|loxAfr1|scaffold_24302 (14345-14456) | |
| 22-122, gnl|mm7|chr7 (14602061-14601950) | |
| 22-122, gnl|Mm7|chr7 (14601958-14602058) | |
| 22-122, gnl|monDom2|scaffold_149 (1824152-1824042) | |
| 22-122, gnl|oryCun1|scaffold_209535 (92648-92537) | |
| 22-122, gnl|panTro1|chr20 (49213861-49213972) | |
| 22-122, gnl|rheMac2|chr19 (53069487-53069598) | |
| 22-122, gnl|rn3|chr1 (77241705-77241594) | |
| 22-122, gnl|tetNig1|chr16 (1353272-1353363) | |
| 211-378, gnl|bosTau2|chr19 (36311990-36311823) | |
| 211-378, gnl|canFam2|chr17 (32376959-32377155) | |
| 211-378, gnl|danRer3|chr9 (5357264-5357090) | |
| 211-378, gnl|dasNov1|scaffold_25979 (12445-12640) | |
| 211-378, gnl|echTel1|scaffold_322978 (81364-81558) | |
| 211-378, gnl|fr1|chrUn (15192223-15192413) | |
| 211-378, gnl|galGal2|chr3 (28431354-28431158) | |
| 211-378, gnl|hg17|chr2 (36988228-36988424) | |
| 211-378, gnl|Hg17|chr2 (36988417-36988250) | |
| 211-378, gnl|loxAfr1|scaffold_20133 (22800-22996) | |
| 211-378, gnl|mm7|chr17 (76956022-76956218) | |
| 211-378, gnl|Mm7|chr17 (76956211-76956044) | |
| 211-378, gnl|monDom2|scaffold_1 (135148200-135148004) | |
| 211-378, gnl|oryCun1|scaffold_211919 (3513-3317) | |
| 211-378, gnl|panTro1|chr12 (38442927-38443123) | |
| 211-378, gnl|rheMac2|chr13 (36827560-36827756) | |
| 211-378, gnl|rn3|chr6 (1429120-1429316) | |
| 211-378, gnl|tetNig1|chr17 (2161708-2161512) | |
| 211-378, gnl|xenTro1|scaffold_303 (1289836-1290029) | |
| 442-1290, gnl|bosTau2|chr18 (49726753-49727586) | |
| 442-1290, gnl|Hg17|chr19 (51915437-51914721) |
| Expressed library(ies): 18 entry(ies) | More info |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
| ecc (0.23007) | |
| ece (0.229305) | |
| jca (0.22792) | |
| cty (0.20816) | |
| fli (0.202881) | |
| jej (0.197844) | |
| fty (0.17584) | |
| fbs (0.175346) | |
| fhi (0.169578) | |
| pty (0.142714) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| cov (0.132153) | |
| cly (0.120642) | |
| eru (0.120048) | |
| clu (0.119646) | |
| med (0.116252) | |
| nbm (0.0993246) |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ecc (0.23007) | |
| ece (0.229305) | |
| jca (0.22792) | |
| cty (0.20816) | |
| fli (0.202881) | |
| jej (0.197844) | |
| fty (0.17584) | |
| fbs (0.175346) | |
| fhi (0.169578) | |
| pty (0.142714) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| cov (0.132153) | |
| cly (0.120642) | |
| eru (0.120048) | |
| clu (0.119646) | |
| med (0.116252) | |
| nbm (0.0993246) |