Non-Coding RNA Search

Ss1.1-rmed12c_i9.5

Sequence:


               
               CTGGAGAGGGGCCCACCCCTGACCCGTGGGGGAGCTCAGAGGGTGGGGCTCCGGTCGGCG
GACCCCCGGCCTCCGATCCCTGGGCCCCGGCCCCGGCCTTCTCAGACCCCTGGGGGGGGT
CACCTGCCAAGCCCAGCACCAATGGCACCACAGTGGTCGGGGGCTTTGACGCAGAGCCGG
ACGAGTTCTCCGACTTCGACCGACTGCGCACGGCCCTGCCGACCTCTGGGAGCAGCACGG
GGGAGCTGGAGATGCTTGCTGGAGAGGTACCTGCCCGCAGTCCTGGCGCCTTCGACATGA
GCGGGGTTGGGGGCTCTCTGGCGGAGGCCGTGGGGAGCCCGCCGCCCACAGACACCCCAA
CCCCCACGCCGCCCACACGGAAGACACCAGAGTCATTTCTGGGGCCCAATGCAGCCCTGG
TCGACCTGGACTCGCTGGTCAGCCGGCCGGGCCCTACACCGCCGGGCGCCAAGGCCTCCA
ACCCCTTCCTGCCGAGCGGAGCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGAGAGGGGCCCACCCCTGACCCGTGGGGGAGCTCAGAGGGTGGGGCTCCGGTCGGCG
GACCCCCGGCCTCCGATCCCTGGGCCCCGGCCCCGGCCTTCTCAGACCCCTGGGGGGGGT
CACCTGCCAAGCCCAGCACCAATGGCACCACAGTGGTCGGGGGCTTTGACGCAGAGCCGG
ACGAGTTCTCCGACTTCGACCGACTGCGCACGGCCCTGCCGACCTCTGGGAGCAGCACGG
GGGAGCTGGAGATGCTTGCTGGAGAGGTACCTGCCCGCAGTCCTGGCGCCTTCGACATGA
GCGGGGTTGGGGGCTCTCTGGCGGAGGCCGTGGGGAGCCCGCCGCCCACAGACACCCCAA
CCCCCACGCCGCCCACACGGAAGACACCAGAGTCATTTCTGGGGCCCAATGCAGCCCTGG
TCGACCTGGACTCGCTGGTCAGCCGGCCGGGCCCTACACCGCCGGGCGCCAAGGCCTCCA
ACCCCTTCCTGCCGAGCGGAGCCC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|3063647|gb|AAC97475.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|3063647|gb|AAC97475.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               279-398, - strand, RNAz p=0.939277

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               279-398, - strand, RNAz p=0.939277

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               42-153, gnl|bosTau2|chr18 (52551023-52551134)
               

               
               42-153, gnl|Hg17|chr19 (60895666-60895974)
               

               
               42-153, gnl|Mm7|chr7 (4673845-4673956)
               


               
               240-499, gnl|bosTau2|chr18 (52551884-52552143)
               

               
               240-499, gnl|Hg17|chr19 (60897903-60898162)
               

               
               240-499, gnl|Mm7|chr7 (4675355-4675614)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               42-153, gnl|bosTau2|chr18 (52551023-52551134)
               

               
               42-153, gnl|Hg17|chr19 (60895666-60895974)
               

               
               42-153, gnl|Mm7|chr7 (4673845-4673956)
               


               
               240-499, gnl|bosTau2|chr18 (52551884-52552143)
               

               
               240-499, gnl|Hg17|chr19 (60897903-60898162)
               

               
               240-499, gnl|Mm7|chr7 (4675355-4675614)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               nlu (0.191681)
               

               
               mcp (0.170648)
               

               
               med (0.116252)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)
               

               
               mcp (0.170648)
               

               
               med (0.116252)

	42-153, gnl\|bosTau2\|chr18 (52551023-52551134)
	42-153, gnl\|Hg17\|chr19 (60895666-60895974)
	42-153, gnl\|Mm7\|chr7 (4673845-4673956)

	240-499, gnl\|bosTau2\|chr18 (52551884-52552143)
	240-499, gnl\|Hg17\|chr19 (60897903-60898162)
	240-499, gnl\|Mm7\|chr7 (4675355-4675614)