Non-Coding RNA Search

Ss1.1-rmed13c_p16.5

Sequence:


               
               GAGGTCCAGGCAAAAATGGATTTGTTGTCAAGGGCTCCAAAAGGCAAGCAGTTTTGGATG
CTCCAGCTGGAATAGCACTCACAAAAGCCATCTCATTAAGTAAAACCTCACCTGAATCTC
CATCCCTTGTATCTTGCCATAGACAAAGCAGTTGCTGCCCCCTAGTGGTCTGAAGGGGCA
GTTCAGGGTGGGGGTGGTGAGGAGGTGTGACTCGATAGTCTATGGTTGGGCTCCAGGAAG
AAAAGTCAGAGGATAGAGCGCCTCTTGGTTGCTTTTCCCCTTTTTATTAAAAATAGACCC
AAACACTTTATGTATCATACAAAAGTTTCATTCGCTGGTGGCAGCCACGAGGAAGCCTGG
CCCCCGTAGCACTGATGTCCCACCTTCCCTCCAAGGGACTGGGTCCCTGGAGCAGTGGCT
GGGCCTCGGAGAACACCCACTAAGACTGCTTGCTCTGGAAACTGCCAGCTGGGGGTGGGG
GCTGTTCCAGGGGCCACTCCCCGCCCCACCCAATAGCAAAGGTCAGATACTCAAAAGTGC
CTCTTTAGTGCCAAGATAAACTTAACAAGTGGAGTGAAATGGAAACCCCAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGGTCCAGGCAAAAATGGATTTGTTGTCAAGGGCTCCAAAAGGCAAGCAGTTTTGGATG
CTCCAGCTGGAATAGCACTCACAAAAGCCATCTCATTAAGTAAAACCTCACCTGAATCTC
CATCCCTTGTATCTTGCCATAGACAAAGCAGTTGCTGCCCCCTAGTGGTCTGAAGGGGCA
GTTCAGGGTGGGGGTGGTGAGGAGGTGTGACTCGATAGTCTATGGTTGGGCTCCAGGAAG
AAAAGTCAGAGGATAGAGCGCCTCTTGGTTGCTTTTCCCCTTTTTATTAAAAATAGACCC
AAACACTTTATGTATCATACAAAAGTTTCATTCGCTGGTGGCAGCCACGAGGAAGCCTGG
CCCCCGTAGCACTGATGTCCCACCTTCCCTCCAAGGGACTGGGTCCCTGGAGCAGTGGCT
GGGCCTCGGAGAACACCCACTAAGACTGCTTGCTCTGGAAACTGCCAGCTGGGGGTGGGG
GCTGTTCCAGGGGCCACTCCCCGCCCCACCCAATAGCAAAGGTCAGATACTCAAAAGTGC
CTCTTTAGTGCCAAGATAAACTTAACAAGTGGAGTGAAATGGAAACCCCAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               449-566, + strand, RNAz p=0.579365

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               449-566, + strand, RNAz p=0.579365

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               9-177, gnl|bosTau2|chr15 (50496108-50495931)
               

               
               9-177, gnl|canFam2|chr18 (41606985-41606701)
               

               
               9-177, gnl|dasNov1|scaffold_108342 (5390-5117)
               

               
               9-177, gnl|echTel1|scaffold_292965 (175077-174677)
               

               
               9-177, gnl|hg17|chr11 (57168699-57168979)
               

               
               9-177, gnl|Hg17|chr11 (57168858-57169042)
               

               
               9-177, gnl|loxAfr1|scaffold_86486 (4472-4215)
               

               
               9-177, gnl|mm7|chr2 (84582798-84582526)
               

               
               9-177, gnl|Mm7|chr2 (84582637-84582454)
               

               
               9-177, gnl|oryCun1|scaffold_157416 (8530-8806)
               

               
               9-177, gnl|panTro1|chr9 (58078365-58078646)
               

               
               9-177, gnl|rheMac2|chr14 (15768590-15768311)
               

               
               9-177, gnl|rn3|chr3 (67844554-67844284)
               


               
               186-589, gnl|bosTau2|chr15 (50495717-50495320)
               

               
               186-589, gnl|Hg17|chr11 (57169045-57169455)
               

               
               186-589, gnl|Mm7|chr2 (84582393-84582050)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-177, gnl|bosTau2|chr15 (50496108-50495931)
               

               
               9-177, gnl|canFam2|chr18 (41606985-41606701)
               

               
               9-177, gnl|dasNov1|scaffold_108342 (5390-5117)
               

               
               9-177, gnl|echTel1|scaffold_292965 (175077-174677)
               

               
               9-177, gnl|hg17|chr11 (57168699-57168979)
               

               
               9-177, gnl|Hg17|chr11 (57168858-57169042)
               

               
               9-177, gnl|loxAfr1|scaffold_86486 (4472-4215)
               

               
               9-177, gnl|mm7|chr2 (84582798-84582526)
               

               
               9-177, gnl|Mm7|chr2 (84582637-84582454)
               

               
               9-177, gnl|oryCun1|scaffold_157416 (8530-8806)
               

               
               9-177, gnl|panTro1|chr9 (58078365-58078646)
               

               
               9-177, gnl|rheMac2|chr14 (15768590-15768311)
               

               
               9-177, gnl|rn3|chr3 (67844554-67844284)
               


               
               186-589, gnl|bosTau2|chr15 (50495717-50495320)
               

               
               186-589, gnl|Hg17|chr11 (57169045-57169455)
               

               
               186-589, gnl|Mm7|chr2 (84582393-84582050)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               med (0.232504)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               med (0.232504)

	9-177, gnl\|bosTau2\|chr15 (50496108-50495931)
	9-177, gnl\|canFam2\|chr18 (41606985-41606701)
	9-177, gnl\|dasNov1\|scaffold_108342 (5390-5117)
	9-177, gnl\|echTel1\|scaffold_292965 (175077-174677)
	9-177, gnl\|hg17\|chr11 (57168699-57168979)
	9-177, gnl\|Hg17\|chr11 (57168858-57169042)
	9-177, gnl\|loxAfr1\|scaffold_86486 (4472-4215)
	9-177, gnl\|mm7\|chr2 (84582798-84582526)
	9-177, gnl\|Mm7\|chr2 (84582637-84582454)
	9-177, gnl\|oryCun1\|scaffold_157416 (8530-8806)
	9-177, gnl\|panTro1\|chr9 (58078365-58078646)
	9-177, gnl\|rheMac2\|chr14 (15768590-15768311)
	9-177, gnl\|rn3\|chr3 (67844554-67844284)

	186-589, gnl\|bosTau2\|chr15 (50495717-50495320)
	186-589, gnl\|Hg17\|chr11 (57169045-57169455)
	186-589, gnl\|Mm7\|chr2 (84582393-84582050)