Ss1.1-rmed14c_i18.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGAGCGAGCGCCATGGTGCTGCTGCACGTGCTGTTCGAGCACGCGGTCGGCTACGCACTG CTGGCGCTGAAGGAGGTGGAAGAGATCAGCCTGCTGCTGCCGCAGGTGGAGGAGTGCGTG CTGAACTTGGGCAAGTTCCACAACATAGTTCGTCTCGTGGCCTTTTCTCCCTTTTCCTCG TCTCAGGTTGCCTTGGAAAATGCCAACGCTGTGTCTGAAGGTGTTGTCCATGAGGATCTC CGCCTGTTCCTGGAGACTCACCTGCCATCTAAAAAGAAGAAAGTACTCTTGGGGGTTGGG GACCCCAAGATAGGTGCTGCTATACAAGAGGAGTTGGGGTACAACTGCCAGACTGGAGGT GTGATAGCTGAGGTCCTTCGAGGAGTTCGACTGCACTTCCACAACCTGGTGAAAGGTCTC ACTGATCTGTCTGCCTGTAAAGCCCAACTGGGGCTGGGACACAGCTATTCTCGTGCCAAA GTTAAGTTCAATGTGAACCGGGTGGACAATATGATTATCCAGTCCATTAGCCTCCTGGAC CAGCTGGATAAGGACATCAATACCTTCTCGATGCGTGTCAGGGAATGGTATGGGTATCAC TTTCCCGAGCTCGTGAAGATCATTAATGATAACGCTACATACTGCCGCCTTGCTCAGTTC ATTGGAAACCGAAGGGAGCTGAACGAAGAAAAGTTGGAGAAGCTGGAGGAGCTGACAATG GATGGGGCCAAGGCTAAGGCTATTCTGGATGCCTCTCGGTCCTCCATGGGCATGGACATA TCTGCCATTGACTTGATAAACATCGAGAGCTTCTCCAGTCGTGTGGTGTCTTTGTCAGAG TACCGCCAAAGCCTACACACTTACCTGCGGTCCAAGATGAGCCAAGTAGCCCCCAGCCTG TCAGCCCTAATTGGGGAAGCGGTAGGTGCACGTCTCATTGCTCATGCTGGCAGTCTCACC AATCTGGCCAAGTATCCAGCGTCCACAGTGCAGATCGCCCAGCAAAGGGACCAAGTTTCC AGAGCCCTGAAGACTAGGGGTAACACCCCAAAATATGGACTCATATTCCATTCTACCTTC ATTGGCCGAGCAGCTGCCAAGAACAAAGGCCGCATCTCCCGATACCTGGCAAACAAATGC AGTATTGCCTCACGAATTGATTGCTTCTCTGAGGTGCCCACCAGTGTATTTGGAGAGAAG CTTCGAGAACAAGTTGAGGAGCGGCTGTCCTTCTATGAGACTGGAGAGATTCCACGAAAG AATCTGGAGGTCATGAAGGAGGCAATGGTTCAGGCAGAGGAAGCTGCTGCAGAGATTACT AGGAAGCTGGAAAAACAGGAGAAGAAACGCTTGAAGAAGGAAAAGAAGCGGTTGGCTGCA GTTGCCCTGGCATCTTCAGAAAACAGCAGTAGTACTCCGGAGGAGTGTGAGGAGACAAGT GAAAGACCCAAGAAAAAGAAGAAAAAGCAGAAGCCCCAGGAGGTGCCGCAGGAGAATGGA ATGGAAGACCCACCTGTCTCCTTCTCCAAACCCAAGAAAAAGAAAGCTTTTTCCAAGGAG GAGTTGGTTAGTAGTGATCTTGAGGAGAGAGCTGGCAGTGGAAGTCTTCCCAAGAGGAAG AAATCTTTGTCCTCTCCAGTTAGTGACCCTGAAGAGTCGGGAAACAAGAAAATCCCCAAG AAAAAGAGGAAATTATCTCCTAAGGAGGAGCCACTCAGCAGTGGACCTGAAGAAGCTGCT GTCAGCAAGAGCAGTGGCTCCAAGAAAAAGAAAAAGCTCCAAAAGCTATCCCAGGAGACT TAGAAATGGACATTTCTTCGTAACCATTTCCCTGGCGGCGGGGCATAACCAGAGATATTT TTTCCCAACCCGTCCTATATCCCAATAAAACTACAGACAAATTCAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGAGCGAGCGCCATGGTGCTGCTGCACGTGCTGTTCGAGCACGCGGTCGGCTACGCACTG CTGGCGCTGAAGGAGGTGGAAGAGATCAGCCTGCTGCTGCCGCAGGTGGAGGAGTGCGTG CTGAACTTGGGCAAGTTCCACAACATAGTTCGTCTCGTGGCCTTTTCTCCCTTTTCCTCG TCTCAGGTTGCCTTGGAAAATGCCAACGCTGTGTCTGAAGGTGTTGTCCATGAGGATCTC CGCCTGTTCCTGGAGACTCACCTGCCATCTAAAAAGAAGAAAGTACTCTTGGGGGTTGGG GACCCCAAGATAGGTGCTGCTATACAAGAGGAGTTGGGGTACAACTGCCAGACTGGAGGT GTGATAGCTGAGGTCCTTCGAGGAGTTCGACTGCACTTCCACAACCTGGTGAAAGGTCTC ACTGATCTGTCTGCCTGTAAAGCCCAACTGGGGCTGGGACACAGCTATTCTCGTGCCAAA GTTAAGTTCAATGTGAACCGGGTGGACAATATGATTATCCAGTCCATTAGCCTCCTGGAC CAGCTGGATAAGGACATCAATACCTTCTCGATGCGTGTCAGGGAATGGTATGGGTATCAC TTTCCCGAGCTCGTGAAGATCATTAATGATAACGCTACATACTGCCGCCTTGCTCAGTTC ATTGGAAACCGAAGGGAGCTGAACGAAGAAAAGTTGGAGAAGCTGGAGGAGCTGACAATG GATGGGGCCAAGGCTAAGGCTATTCTGGATGCCTCTCGGTCCTCCATGGGCATGGACATA TCTGCCATTGACTTGATAAACATCGAGAGCTTCTCCAGTCGTGTGGTGTCTTTGTCAGAG TACCGCCAAAGCCTACACACTTACCTGCGGTCCAAGATGAGCCAAGTAGCCCCCAGCCTG TCAGCCCTAATTGGGGAAGCGGTAGGTGCACGTCTCATTGCTCATGCTGGCAGTCTCACC AATCTGGCCAAGTATCCAGCGTCCACAGTGCAGATCGCCCAGCAAAGGGACCAAGTTTCC AGAGCCCTGAAGACTAGGGGTAACACCCCAAAATATGGACTCATATTCCATTCTACCTTC ATTGGCCGAGCAGCTGCCAAGAACAAAGGCCGCATCTCCCGATACCTGGCAAACAAATGC AGTATTGCCTCACGAATTGATTGCTTCTCTGAGGTGCCCACCAGTGTATTTGGAGAGAAG CTTCGAGAACAAGTTGAGGAGCGGCTGTCCTTCTATGAGACTGGAGAGATTCCACGAAAG AATCTGGAGGTCATGAAGGAGGCAATGGTTCAGGCAGAGGAAGCTGCTGCAGAGATTACT AGGAAGCTGGAAAAACAGGAGAAGAAACGCTTGAAGAAGGAAAAGAAGCGGTTGGCTGCA GTTGCCCTGGCATCTTCAGAAAACAGCAGTAGTACTCCGGAGGAGTGTGAGGAGACAAGT GAAAGACCCAAGAAAAAGAAGAAAAAGCAGAAGCCCCAGGAGGTGCCGCAGGAGAATGGA ATGGAAGACCCACCTGTCTCCTTCTCCAAACCCAAGAAAAAGAAAGCTTTTTCCAAGGAG GAGTTGGTTAGTAGTGATCTTGAGGAGAGAGCTGGCAGTGGAAGTCTTCCCAAGAGGAAG AAATCTTTGTCCTCTCCAGTTAGTGACCCTGAAGAGTCGGGAAACAAGAAAATCCCCAAG AAAAAGAGGAAATTATCTCCTAAGGAGGAGCCACTCAGCAGTGGACCTGAAGAAGCTGCT GTCAGCAAGAGCAGTGGCTCCAAGAAAAAGAAAAAGCTCCAAAAGCTATCCCAGGAGACT TAGAAATGGACATTTCTTCGTAACCATTTCCCTGGCGGCGGGGCATAACCAGAGATATTT TTTCCCAACCCGTCCTATATCCCAATAAAACTACAGACAAATTCAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1483-1796, - strand, RNAz p=0.999838 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1483-1796, - strand, RNAz p=0.999838 |
| Aligned organism(s): 44 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
| 100-223, gnl|bosTau2|chr13 (34309493-34309616) | |
| 100-223, gnl|Hg17|chr20 (2581919-2582042) | |
| 100-223, gnl|Mm7|chr2 (130015881-130016002) | |
| 376-595, gnl|bosTau2|chr13 (34310521-34310741) | |
| 376-595, gnl|canFam2|chr24 (21562007-21561775) | |
| 376-595, gnl|danRer3|chrNA (130353711-130353945) | |
| 376-595, gnl|dasNov1|scaffold_50914 (4195-4427) | |
| 376-595, gnl|echTel1|scaffold_304273 (86862-86630) | |
| 376-595, gnl|fr1|chrUn (114755016-114754789) | |
| 376-595, gnl|galGal2|chrUn (159902338-159902139) | |
| 376-595, gnl|hg17|chr20 (2583370-2583603) | |
| 376-595, gnl|Hg17|chr20 (2583387-2583608) | |
| 376-595, gnl|loxAfr1|scaffold_47558 (8090-7868) | |
| 376-595, gnl|mm7|chr2 (130016804-130017037) | |
| 376-595, gnl|Mm7|chr2 (130016821-130017042) | |
| 376-595, gnl|monDom2|scaffold_10 (48383833-48384066) | |
| 376-595, gnl|oryCun1|scaffold_177582 (41007-40772) | |
| 376-595, gnl|panTro1|chr21 (2576195-2576428) | |
| 376-595, gnl|rheMac2|chr10 (35965401-35965634) | |
| 376-595, gnl|rn3|chr3 (117794751-117794982) | |
| 376-595, gnl|tetNig1|chr11 (778517-778769) | |
| 376-595, gnl|xenTro1|scaffold_592 (41130-41357) | |
| 743-923, gnl|bosTau2|chr13 (34311308-34311489) | |
| 743-923, gnl|canFam2|chr24 (21561224-21561014) | |
| 743-923, gnl|danRer3|chrNA (130356016-130356290) | |
| 743-923, gnl|dasNov1|scaffold_50914 (4972-5189) | |
| 743-923, gnl|echTel1|scaffold_304273 (86119-85912) | |
| 743-923, gnl|fr1|chrUn (114754204-114753986) | |
| 743-923, gnl|galGal2|chrUn (36493229-36493028) | |
| 743-923, gnl|hg17|chr20 (2584186-2584399) | |
| 743-923, gnl|Hg17|chr20 (2584213-2584394) | |
| 743-923, gnl|loxAfr1|scaffold_47558 (7253-7041) | |
| 743-923, gnl|mm7|chr2 (130017504-130017718) | |
| 743-923, gnl|Mm7|chr2 (130017532-130017713) | |
| 743-923, gnl|monDom2|scaffold_10 (48384623-48384821) | |
| 743-923, gnl|oryCun1|scaffold_177582 (40238-40027) | |
| 743-923, gnl|panTro1|chr21 (2577011-2577224) | |
| 743-923, gnl|rheMac2|chr10 (35966161-35966374) | |
| 743-923, gnl|rn3|chr3 (117795499-117795713) | |
| 743-923, gnl|tetNig1|chr11 (779353-779591) | |
| 743-923, gnl|xenTro1|scaffold_592 (42139-42426) | |
| 997-1821, gnl|bosTau2|chr11 (75297792-75298614) | |
| 997-1821, gnl|Hg17|chr20 (2584835-2586967) | |
| 997-1821, gnl|Mm7|chr19 (5330778-5331550) |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 100-223, gnl|bosTau2|chr13 (34309493-34309616) | |
| 100-223, gnl|Hg17|chr20 (2581919-2582042) | |
| 100-223, gnl|Mm7|chr2 (130015881-130016002) | |
| 376-595, gnl|bosTau2|chr13 (34310521-34310741) | |
| 376-595, gnl|canFam2|chr24 (21562007-21561775) | |
| 376-595, gnl|danRer3|chrNA (130353711-130353945) | |
| 376-595, gnl|dasNov1|scaffold_50914 (4195-4427) | |
| 376-595, gnl|echTel1|scaffold_304273 (86862-86630) | |
| 376-595, gnl|fr1|chrUn (114755016-114754789) | |
| 376-595, gnl|galGal2|chrUn (159902338-159902139) | |
| 376-595, gnl|hg17|chr20 (2583370-2583603) | |
| 376-595, gnl|Hg17|chr20 (2583387-2583608) | |
| 376-595, gnl|loxAfr1|scaffold_47558 (8090-7868) | |
| 376-595, gnl|mm7|chr2 (130016804-130017037) | |
| 376-595, gnl|Mm7|chr2 (130016821-130017042) | |
| 376-595, gnl|monDom2|scaffold_10 (48383833-48384066) | |
| 376-595, gnl|oryCun1|scaffold_177582 (41007-40772) | |
| 376-595, gnl|panTro1|chr21 (2576195-2576428) | |
| 376-595, gnl|rheMac2|chr10 (35965401-35965634) | |
| 376-595, gnl|rn3|chr3 (117794751-117794982) | |
| 376-595, gnl|tetNig1|chr11 (778517-778769) | |
| 376-595, gnl|xenTro1|scaffold_592 (41130-41357) | |
| 743-923, gnl|bosTau2|chr13 (34311308-34311489) | |
| 743-923, gnl|canFam2|chr24 (21561224-21561014) | |
| 743-923, gnl|danRer3|chrNA (130356016-130356290) | |
| 743-923, gnl|dasNov1|scaffold_50914 (4972-5189) | |
| 743-923, gnl|echTel1|scaffold_304273 (86119-85912) | |
| 743-923, gnl|fr1|chrUn (114754204-114753986) | |
| 743-923, gnl|galGal2|chrUn (36493229-36493028) | |
| 743-923, gnl|hg17|chr20 (2584186-2584399) | |
| 743-923, gnl|Hg17|chr20 (2584213-2584394) | |
| 743-923, gnl|loxAfr1|scaffold_47558 (7253-7041) | |
| 743-923, gnl|mm7|chr2 (130017504-130017718) | |
| 743-923, gnl|Mm7|chr2 (130017532-130017713) | |
| 743-923, gnl|monDom2|scaffold_10 (48384623-48384821) | |
| 743-923, gnl|oryCun1|scaffold_177582 (40238-40027) | |
| 743-923, gnl|panTro1|chr21 (2577011-2577224) | |
| 743-923, gnl|rheMac2|chr10 (35966161-35966374) | |
| 743-923, gnl|rn3|chr3 (117795499-117795713) | |
| 743-923, gnl|tetNig1|chr11 (779353-779591) | |
| 743-923, gnl|xenTro1|scaffold_592 (42139-42426) | |
| 997-1821, gnl|bosTau2|chr11 (75297792-75298614) | |
| 997-1821, gnl|Hg17|chr20 (2584835-2586967) | |
| 997-1821, gnl|Mm7|chr19 (5330778-5331550) |
| Expressed library(ies): 36 entry(ies) | More info |
| Expressed library(ies): 36 entry(ies) | Help | Less info |
| ill (0.702371) | |
| fcc (0.39557) | |
| fty (0.351679) | |
| cut (0.339847) | |
| cty (0.31224) | |
| nbm (0.297974) | |
| eje (0.296501) | |
| cte (0.29274) | |
| liv (0.292569) | |
| spl (0.286369) | |
| ese (0.253004) | |
| cly (0.241284) | |
| ecc (0.23007) | |
| ece (0.229305) | |
| nms (0.213858) | |
| mas (0.210305) | |
| hea (0.204499) | |
| col (0.195008) | |
| cmu (0.186393) | |
| duo (0.172801) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| cje (0.165235) | |
| csp (0.161186) | |
| eli (0.151814) | |
| isp (0.150376) | |
| nca (0.136874) | |
| che (0.136314) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| ova (0.129132) | |
| thg (0.126791) | |
| eep (0.122564) | |
| ebs (0.118301) | |
| med (0.116252) | |
| jej (0.0989218) |
| Expressed library(ies): 36 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ill (0.702371) | |
| fcc (0.39557) | |
| fty (0.351679) | |
| cut (0.339847) | |
| cty (0.31224) | |
| nbm (0.297974) | |
| eje (0.296501) | |
| cte (0.29274) | |
| liv (0.292569) | |
| spl (0.286369) | |
| ese (0.253004) | |
| cly (0.241284) | |
| ecc (0.23007) | |
| ece (0.229305) | |
| nms (0.213858) | |
| mas (0.210305) | |
| hea (0.204499) | |
| col (0.195008) | |
| cmu (0.186393) | |
| duo (0.172801) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| cje (0.165235) | |
| csp (0.161186) | |
| eli (0.151814) | |
| isp (0.150376) | |
| nca (0.136874) | |
| che (0.136314) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| ova (0.129132) | |
| thg (0.126791) | |
| eep (0.122564) | |
| ebs (0.118301) | |
| med (0.116252) | |
| jej (0.0989218) |