Non-Coding RNA Search

Ss1.1-rmed15c_d9.5

Sequence:


               
               TTATATCCTCTCTAGTAATAGAAAAACATTTAATACTTGTAATGCTGATGTGTTCATTTG
ATACCAGTTGAGTAGAATGTGATCAGTCCAGTTTACAATCTATCAAGAGTATCATTAAGT
AAAATATATGTACTTTTCAATAGGAGTCATTCTTTTCTTGCTGTAACACTTGACCTTAAC
TTTTAGAAAGTGTTCATTTTTTAACTGCAACTGGAAAGGTTGAAAAGTCAGGATTCTTGT
ATTTGTGAACTGTGATCTGAAGCAGATTTAAAAAGTGTAGAAAAAAACACAAATTGTCCT
TCTTTGTAAAGGTCTGTGATACCATGTTTCAGCTTTGTGTAAGTACTTTGAATATCCAAA
GGGTTGTGATGATCAGTTCTTGATATGCAACTGTCCACTTAATAAGGACACATGTTCCAG
CGTCTCTTAGGACTGTGGTCATAAATGATGCTGGAATTAACCATTTTGTGAAATAGTTGG
TATCCCTTTACTACTATAATTAATTTTTGTCATTCCAGGAACTCTCTGTGAAGCCAGCCA
ATTAATAAAGCACTTTAGCATCTGTTCAGGTAGTTTTGAAAACCAACTTTTCCCCTTCAG
GATAAGAACTTCCAGGTTACCTAAAAATGCAATAAACATCTTTATAATCTAAGCTTCTTG
GCACATAATTTTTCATCAGGGCTTTTCTTTTATTAAATGAGCACAATACTGTTATGATTT
TCCCCCCAACCACTCAGCTCCTTGTATAGTTTTTAATTGTATAGCTGTGTGAACGAAGTG
GCTAAGACATGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTATATCCTCTCTAGTAATAGAAAAACATTTAATACTTGTAATGCTGATGTGTTCATTTG
ATACCAGTTGAGTAGAATGTGATCAGTCCAGTTTACAATCTATCAAGAGTATCATTAAGT
AAAATATATGTACTTTTCAATAGGAGTCATTCTTTTCTTGCTGTAACACTTGACCTTAAC
TTTTAGAAAGTGTTCATTTTTTAACTGCAACTGGAAAGGTTGAAAAGTCAGGATTCTTGT
ATTTGTGAACTGTGATCTGAAGCAGATTTAAAAAGTGTAGAAAAAAACACAAATTGTCCT
TCTTTGTAAAGGTCTGTGATACCATGTTTCAGCTTTGTGTAAGTACTTTGAATATCCAAA
GGGTTGTGATGATCAGTTCTTGATATGCAACTGTCCACTTAATAAGGACACATGTTCCAG
CGTCTCTTAGGACTGTGGTCATAAATGATGCTGGAATTAACCATTTTGTGAAATAGTTGG
TATCCCTTTACTACTATAATTAATTTTTGTCATTCCAGGAACTCTCTGTGAAGCCAGCCA
ATTAATAAAGCACTTTAGCATCTGTTCAGGTAGTTTTGAAAACCAACTTTTCCCCTTCAG
GATAAGAACTTCCAGGTTACCTAAAAATGCAATAAACATCTTTATAATCTAAGCTTCTTG
GCACATAATTTTTCATCAGGGCTTTTCTTTTATTAAATGAGCACAATACTGTTATGATTT
TCCCCCCAACCACTCAGCTCCTTGTATAGTTTTTAATTGTATAGCTGTGTGAACGAAGTG
GCTAAGACATGT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               359-517, + strand, RNAz p=0.998242

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               359-517, + strand, RNAz p=0.998242

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               359-517, DA938943 SPLEN2 Homo sapiens cDNA clone SPLEN2012335 5', mRNA 
(dbj|DA938943.1|), blast E-value=9e-37, identity=88.68% 
               

               
               359-517, DB267981 UTERU2 Homo sapiens cDNA clone UTERU2028394 5', mRNA 
(dbj|DB267981.1|), blast E-value=9e-37, identity=88.68% 
               

               
               365-517, CH3#028_G07T7 Canine heart normalized cDNA Library in pBluescript 
(gb|BU749758.1|), blast E-value=0, identity=94.77% 
               

               
               359-517, LeukoS1_6_H04.g1_A023 Stimulated peripheral blood leukocytes S1 
(gb|CD467769.1|), blast E-value=0, identity=95.6% 
               

               
               359-517, BovGen_06924 normal cattle brain Bos taurus cDNA clone 
(gb|CO878599.1|), blast E-value=0, identity=93.75% 
               

               
               359-517, HW_Fat_6_B01 Bos taurus CF-24-HW fat cDNA library Bos taurus cDNA, 
(gb|DV781176.1|), blast E-value=0, identity=93.75%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               359-517, DA938943 SPLEN2 Homo sapiens cDNA clone SPLEN2012335 5', mRNA 
(dbj|DA938943.1|), blast E-value=9e-37, identity=88.68% 
               

               
               359-517, DB267981 UTERU2 Homo sapiens cDNA clone UTERU2028394 5', mRNA 
(dbj|DB267981.1|), blast E-value=9e-37, identity=88.68% 
               

               
               365-517, CH3#028_G07T7 Canine heart normalized cDNA Library in pBluescript 
(gb|BU749758.1|), blast E-value=0, identity=94.77% 
               

               
               359-517, LeukoS1_6_H04.g1_A023 Stimulated peripheral blood leukocytes S1 
(gb|CD467769.1|), blast E-value=0, identity=95.6% 
               

               
               359-517, BovGen_06924 normal cattle brain Bos taurus cDNA clone 
(gb|CO878599.1|), blast E-value=0, identity=93.75% 
               

               
               359-517, HW_Fat_6_B01 Bos taurus CF-24-HW fat cDNA library Bos taurus cDNA, 
(gb|DV781176.1|), blast E-value=0, identity=93.75%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-790, gnl|bosTau2|chr11 (77002829-77002034)
               

               
               1-790, gnl|Hg17|chr9 (124990633-124989840)
               

               
               1-790, gnl|Mm7|chr2 (39203756-39202994)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-790, gnl|bosTau2|chr11 (77002829-77002034)
               

               
               1-790, gnl|Hg17|chr9 (124990633-124989840)
               

               
               1-790, gnl|Mm7|chr2 (39203756-39202994)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               ret (0.128733)
               

               
               bla (0.124347)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               cbl (0.114797)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.128733)
               

               
               bla (0.124347)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               cbl (0.114797)

	359-517, DA938943 SPLEN2 Homo sapiens cDNA clone SPLEN2012335 5', mRNA (dbj\|DA938943.1\|), blast E-value=9e-37, identity=88.68%
	359-517, DB267981 UTERU2 Homo sapiens cDNA clone UTERU2028394 5', mRNA (dbj\|DB267981.1\|), blast E-value=9e-37, identity=88.68%
	365-517, CH3#028_G07T7 Canine heart normalized cDNA Library in pBluescript (gb\|BU749758.1\|), blast E-value=0, identity=94.77%
	359-517, LeukoS1_6_H04.g1_A023 Stimulated peripheral blood leukocytes S1 (gb\|CD467769.1\|), blast E-value=0, identity=95.6%
	359-517, BovGen_06924 normal cattle brain Bos taurus cDNA clone (gb\|CO878599.1\|), blast E-value=0, identity=93.75%
	359-517, HW_Fat_6_B01 Bos taurus CF-24-HW fat cDNA library Bos taurus cDNA, (gb\|DV781176.1\|), blast E-value=0, identity=93.75%

	1-790, gnl\|bosTau2\|chr11 (77002829-77002034)
	1-790, gnl\|Hg17\|chr9 (124990633-124989840)
	1-790, gnl\|Mm7\|chr2 (39203756-39202994)

	ret (0.128733)
	bla (0.124347)
	ebs (0.118301)
	med (0.116252)
	cbl (0.114797)