Non-Coding RNA Search

Ss1.1-rmed15c_e16.5

Sequence:


               
               AGCTGGTGTGGTAGCCACTGCTCCCAGTCCTCCGGATTCCTCTTCTAGTGTATGTGCTTC
CAAACCAGACGAAGGTCTCCCAGATGGTCTAAGCCCCAAAGACCCTGCACAGAAGCACCA
GAACTCGTCTCTGTCAAGTACTGACTTTAAGACGGCAGATTCAGAGGTAAACACAGATCA
AGATATTGAAAAGAATCTGGATAAAATGATGACAGAGAGAACCCTGTTGAAGGAGCGTTA
CCAGGAGGTCCTGGACAAGCAGAGGCAAGTGGAGAATCAGCTCCAAGTGCAATTAAAGCA
ACTTCAGCAAAGGAGAGAAGAAGAAATGAAGAATCACCAGGAGATATTAAAGGCTATCCA
GGATGTAACAATAAAGCGAGAAGAAACGAAGAAGAAGATAGAGAAAGAAAAGAAGGAGTT
TTTGCAGAAGGAACAGGATCTGAAAGCTGAAATTGAGAAGCTTTGTGAGAAGGGCAGAAG
AGAAGTGTGGGAAATGGAACTGGATAGACTCAAGAATCAGGATGGCGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCTGGTGTGGTAGCCACTGCTCCCAGTCCTCCGGATTCCTCTTCTAGTGTATGTGCTTC
CAAACCAGACGAAGGTCTCCCAGATGGTCTAAGCCCCAAAGACCCTGCACAGAAGCACCA
GAACTCGTCTCTGTCAAGTACTGACTTTAAGACGGCAGATTCAGAGGTAAACACAGATCA
AGATATTGAAAAGAATCTGGATAAAATGATGACAGAGAGAACCCTGTTGAAGGAGCGTTA
CCAGGAGGTCCTGGACAAGCAGAGGCAAGTGGAGAATCAGCTCCAAGTGCAATTAAAGCA
ACTTCAGCAAAGGAGAGAAGAAGAAATGAAGAATCACCAGGAGATATTAAAGGCTATCCA
GGATGTAACAATAAAGCGAGAAGAAACGAAGAAGAAGATAGAGAAAGAAAAGAAGGAGTT
TTTGCAGAAGGAACAGGATCTGAAAGCTGAAATTGAGAAGCTTTGTGAGAAGGGCAGAAG
AGAAGTGTGGGAAATGGAACTGGATAGACTCAAGAATCAGGATGGCGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               199-341, + strand, RNAz p=0.996645

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               199-341, + strand, RNAz p=0.996645

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC064581, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC064581, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               199-341, gnl|bosTau2|chr15 (9246295-9246437)
               

               
               199-341, gnl|Hg17|chr11 (116620370-116620512)
               

               
               199-341, gnl|Mm7|chr9 (45854349-45854207)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               199-341, gnl|bosTau2|chr15 (9246295-9246437)
               

               
               199-341, gnl|Hg17|chr11 (116620370-116620512)
               

               
               199-341, gnl|Mm7|chr9 (45854349-45854207)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ute (0.132784)
               

               
               med (0.116252)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ute (0.132784)
               

               
               med (0.116252)

	199-341, gnl\|bosTau2\|chr15 (9246295-9246437)
	199-341, gnl\|Hg17\|chr11 (116620370-116620512)
	199-341, gnl\|Mm7\|chr9 (45854349-45854207)