Non-Coding RNA Search

Ss1.1-rmed15c_l15.5

Sequence:


               
               ATGGGTTTAAGATCTTAGTATCTGCTAATGAATCTTGGATTTTCACTGAAAGGATCAGGT
TTTTGGTTTTGTTTTGCTTTTTTTCCCATCCTCCTTTTACCTATTTGAAACATTTTCTCA
GTGTCTAGAATCATGTGGGGGTGATTCCCAAAGTGTCTTCAAGGGATTTTTAGGAGCCCC
TGTGGACACAGATGCATATTTTGTTGGAGTGAGAAACATTCGAACAAAGCCAGCTTAATG
GCAGATCTGTGATGAGAATGGTGGTGGTACTTTGGAGGATTATATTCCCTAAAGCTGAGA
CATGTAGTTTTGTTGCTCCTGGATTTGGTGATCAAGAGCTCTGGTCAGCGCAGTGAAGCT
AAAGGCCTTGTCTTAGAGGCAATAAAAAGGATAATGAAAAAATACAGTGGTGAGTCTTTG
TCTTTAAGAAGGTGAGCCCTTTTTCTAATCTGCTCCTCACATAATTAAAAGAATCTGTGC
AGTACTTAATGGTTATGGTGCTTGGAATGCTGGTTTTTAAGATGGAGACATTTTGTTTTC
TCATTGTTTATTCCATTGTTTCAGGTTCTTCTGATACCATCTGTGATCTGTTGGGAGCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGGGTTTAAGATCTTAGTATCTGCTAATGAATCTTGGATTTTCACTGAAAGGATCAGGT
TTTTGGTTTTGTTTTGCTTTTTTTCCCATCCTCCTTTTACCTATTTGAAACATTTTCTCA
GTGTCTAGAATCATGTGGGGGTGATTCCCAAAGTGTCTTCAAGGGATTTTTAGGAGCCCC
TGTGGACACAGATGCATATTTTGTTGGAGTGAGAAACATTCGAACAAAGCCAGCTTAATG
GCAGATCTGTGATGAGAATGGTGGTGGTACTTTGGAGGATTATATTCCCTAAAGCTGAGA
CATGTAGTTTTGTTGCTCCTGGATTTGGTGATCAAGAGCTCTGGTCAGCGCAGTGAAGCT
AAAGGCCTTGTCTTAGAGGCAATAAAAAGGATAATGAAAAAATACAGTGGTGAGTCTTTG
TCTTTAAGAAGGTGAGCCCTTTTTCTAATCTGCTCCTCACATAATTAAAAGAATCTGTGC
AGTACTTAATGGTTATGGTGCTTGGAATGCTGGTTTTTAAGATGGAGACATTTTGTTTTC
TCATTGTTTATTCCATTGTTTCAGGTTCTTCTGATACCATCTGTGATCTGTTGGGAGCCA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               238-395, + strand, RNAz p=0.79499

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               238-395, + strand, RNAz p=0.79499

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               80-519, gnl|bosTau2|chr26 (17514591-17514149)
               

               
               80-519, gnl|Hg17|chr10 (104843502-104843097)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               80-519, gnl|bosTau2|chr26 (17514591-17514149)
               

               
               80-519, gnl|Hg17|chr10 (104843502-104843097)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               med (0.232504)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               med (0.232504)

	80-519, gnl\|bosTau2\|chr26 (17514591-17514149)
	80-519, gnl\|Hg17\|chr10 (104843502-104843097)