Non-Coding RNA Search

Ss1.1-rmed16c_n8.5

Sequence:


               
               TTTTTTTTTTTTTTTTGACTTTCCAAAATCCTTTATTTAACAGAATTGGAACAAACGCTG
GCAACCTACTACACGAACTCAAGTGTGCTAAATGCAAGACATACAGGGAGCCTTGCTTCT
CTCTGGCAGCTCTGGGCAAAGCTGCAGAATGCCTCCCTGTGTCCTGGCTGAATGGCAAGT
TTGAGCTTCTGCTCAGACCAGGGCTGCCAGGGCCCGAGGTCTCCTTCTGCCAGGACACCC
GTGCCCAGCTCAGCATTGCTGTCACCTTTGCCCCCAGACCCACACAGTGCCTGAGAAGTC
TGGGACAGGTGAAATCCCGGAGAGCCCTGGCGACCCTGCAAGATCCTTCCTCCTGCCTGT
AGGTCCCTCCCTGCACCCACCAGGGGCTGGTCCATAAATATTACTCCTTCAGGAAGCAGG
GCTAGCGGCCTAGCTGGGCTGGTTATCCCTGCTGTTCACGGCAAGCCATCCTCTGGAGGA
GGGTGGCAGAACCAAGAGACCCAGGACCCTGCCCCGACACACTTGGACCCCAGGGAGGAG
AGACTAGAGCATGAGAAGGCAGGGTCCACCCTGCAGACCCCAAACTGGCCATTGGTCACC
AAGGTCTCCAGACACTATGGGCCATGTGCGCAGCAGTCAGACTGCCCAGGGCTACGGGCA
CCAACTCTGGCCCCTCAACAGTTGCCCGGCTCAGTTCAGCCTCTGGGGCCTCCTCCAGGT
CGGAGGACTGGTCGTCCCCGGAGCCCCGCGGGCTGGGCAGTGGGGACCCCAGGGGACCTC
CCACTGGCCAGTTGCTCCGCCCGTGGACTCCCGGTGGCCCGGACAGGGCGTCCCCCAGCA
GGTCCCTGAAGCTGCTGCTCTCGCGCAGCGGCATGGACTCCAGCAGGTGGTTCAGGAGCT
CGGCGGCGACGGTGGCGTCGATTGCCTGGCACGTGGACACGAACGTGTGCACCTCGTGCA
TGCACTGGATGTAGCCGGCGGCGAAGCGCTCGCTTGCTTCCGCCTGCAACTGCTCACGCT
CGCGCGCCCGGCCCCGCAGCGCGCCCTGCACGCGCCGCACGGTGAGCTCCAGCACCTCTG
CGTTCTCCAGCTTGGCCTGCACCTCGGCGCCCGCCAGCAGCAGCCGCAGCTCCTGCAGGC
TCTCGTTGATCCGCGCGCGCCGCTTCTTCTCCACCAGAGGCTTCCGGGCCTTGCGGTCCC
CCCTCGCCTCGCAGCCGTCCTCATCCTCCCGACCCGCACGGTCCCGGCCGGGCGCCAGCA
GCGGAGCCATCACCCACACCGACCAGACCGCGGAGAGCGCTAGAAGCCCCCCGCGCTGCC
CGCAGCTCAGCGGCCGGGAGCCGCCCTCCCGGCCTCCCCGCGTCTGAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTGACTTTCCAAAATCCTTTATTTAACAGAATTGGAACAAACGCTG
GCAACCTACTACACGAACTCAAGTGTGCTAAATGCAAGACATACAGGGAGCCTTGCTTCT
CTCTGGCAGCTCTGGGCAAAGCTGCAGAATGCCTCCCTGTGTCCTGGCTGAATGGCAAGT
TTGAGCTTCTGCTCAGACCAGGGCTGCCAGGGCCCGAGGTCTCCTTCTGCCAGGACACCC
GTGCCCAGCTCAGCATTGCTGTCACCTTTGCCCCCAGACCCACACAGTGCCTGAGAAGTC
TGGGACAGGTGAAATCCCGGAGAGCCCTGGCGACCCTGCAAGATCCTTCCTCCTGCCTGT
AGGTCCCTCCCTGCACCCACCAGGGGCTGGTCCATAAATATTACTCCTTCAGGAAGCAGG
GCTAGCGGCCTAGCTGGGCTGGTTATCCCTGCTGTTCACGGCAAGCCATCCTCTGGAGGA
GGGTGGCAGAACCAAGAGACCCAGGACCCTGCCCCGACACACTTGGACCCCAGGGAGGAG
AGACTAGAGCATGAGAAGGCAGGGTCCACCCTGCAGACCCCAAACTGGCCATTGGTCACC
AAGGTCTCCAGACACTATGGGCCATGTGCGCAGCAGTCAGACTGCCCAGGGCTACGGGCA
CCAACTCTGGCCCCTCAACAGTTGCCCGGCTCAGTTCAGCCTCTGGGGCCTCCTCCAGGT
CGGAGGACTGGTCGTCCCCGGAGCCCCGCGGGCTGGGCAGTGGGGACCCCAGGGGACCTC
CCACTGGCCAGTTGCTCCGCCCGTGGACTCCCGGTGGCCCGGACAGGGCGTCCCCCAGCA
GGTCCCTGAAGCTGCTGCTCTCGCGCAGCGGCATGGACTCCAGCAGGTGGTTCAGGAGCT
CGGCGGCGACGGTGGCGTCGATTGCCTGGCACGTGGACACGAACGTGTGCACCTCGTGCA
TGCACTGGATGTAGCCGGCGGCGAAGCGCTCGCTTGCTTCCGCCTGCAACTGCTCACGCT
CGCGCGCCCGGCCCCGCAGCGCGCCCTGCACGCGCCGCACGGTGAGCTCCAGCACCTCTG
CGTTCTCCAGCTTGGCCTGCACCTCGGCGCCCGCCAGCAGCAGCCGCAGCTCCTGCAGGC
TCTCGTTGATCCGCGCGCGCCGCTTCTTCTCCACCAGAGGCTTCCGGGCCTTGCGGTCCC
CCCTCGCCTCGCAGCCGTCCTCATCCTCCCGACCCGCACGGTCCCGGCCGGGCGCCAGCA
GCGGAGCCATCACCCACACCGACCAGACCGCGGAGAGCGCTAGAAGCCCCCCGCGCTGCC
CGCAGCTCAGCGGCCGGGAGCCGCCCTCCCGGCCTCCCCGCGTCTGAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q53SN9_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q53SN9_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               140-249, - strand, RNAz p=0.962204

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               140-249, - strand, RNAz p=0.962204

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               22-353, gnl|bosTau2|chr3 (84615356-84615679)
               

               
               22-353, gnl|Hg17|chr2 (238928924-238929223)
               

               
               22-353, gnl|Mm7|chr1 (91318952-91319281)
               


               
               501-1028, gnl|bosTau2|chr3 (84615792-84616321)
               

               
               501-1028, gnl|Hg17|chr2 (238929373-238929901)
               

               
               501-1028, gnl|Mm7|chr1 (91319414-91319936)
               


               
               1189-1366, gnl|bosTau2|chr3 (84616883-84617058)
               

               
               1189-1366, gnl|Hg17|chr2 (238930465-238930672)
               

               
               1189-1366, gnl|Mm7|chr1 (91320501-91320666)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               22-353, gnl|bosTau2|chr3 (84615356-84615679)
               

               
               22-353, gnl|Hg17|chr2 (238928924-238929223)
               

               
               22-353, gnl|Mm7|chr1 (91318952-91319281)
               


               
               501-1028, gnl|bosTau2|chr3 (84615792-84616321)
               

               
               501-1028, gnl|Hg17|chr2 (238929373-238929901)
               

               
               501-1028, gnl|Mm7|chr1 (91319414-91319936)
               


               
               1189-1366, gnl|bosTau2|chr3 (84616883-84617058)
               

               
               1189-1366, gnl|Hg17|chr2 (238930465-238930672)
               

               
               1189-1366, gnl|Mm7|chr1 (91320501-91320666)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               fce (0.814775)
               

               
               med (0.348756)
               

               
               ecc (0.345105)
               

               
               ebs (0.236602)
               

               
               ill (0.175593)
               

               
               eye (0.170503)
               

               
               nje (0.16592)
               

               
               pty (0.142714)
               

               
               eje (0.0988338)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.814775)
               

               
               med (0.348756)
               

               
               ecc (0.345105)
               

               
               ebs (0.236602)
               

               
               ill (0.175593)
               

               
               eye (0.170503)
               

               
               nje (0.16592)
               

               
               pty (0.142714)
               

               
               eje (0.0988338)

	22-353, gnl\|bosTau2\|chr3 (84615356-84615679)
	22-353, gnl\|Hg17\|chr2 (238928924-238929223)
	22-353, gnl\|Mm7\|chr1 (91318952-91319281)

	501-1028, gnl\|bosTau2\|chr3 (84615792-84616321)
	501-1028, gnl\|Hg17\|chr2 (238929373-238929901)
	501-1028, gnl\|Mm7\|chr1 (91319414-91319936)

	1189-1366, gnl\|bosTau2\|chr3 (84616883-84617058)
	1189-1366, gnl\|Hg17\|chr2 (238930465-238930672)
	1189-1366, gnl\|Mm7\|chr1 (91320501-91320666)

	fce (0.814775)
	med (0.348756)
	ecc (0.345105)
	ebs (0.236602)
	ill (0.175593)
	eye (0.170503)
	nje (0.16592)
	pty (0.142714)
	eje (0.0988338)