Non-Coding RNA Search

Ss1.1-rmed16c_p6.5

Sequence:


               
               TGGCCGAACGGCGCAATGCCCGCTGCCTAGTAAACGGACTCTCCCTGGACCACTCGAAAC
TGGTGGACGTCCCTTTCCAAGTGGAATTCCCGGCACCCAAGAACGAGCTGGTACAAAAGT
TCCAAGTCTATTACCTGGGGAATGTGCCTGTTGCTAAACCCGTTGGGGTGGATGTGATCA
ACGGGGCCCTGGAGTCGGTCCTGTCCTCCAGTAGCCGTGAGCAGTGGACACCGAGTCACG
TCAGCGTGGCCCCTGCCACGCTCACCATCTTGCACCAGCAGACCGAGGCCGTGCTGGGGG
AGTGCCGCGTGCGCTTCCTGTCCTTCCTGGCCGTGGGCAGGGATGTCCACACCTTTGCGT
TCATCATGGCTGCTGGCCCGGCCTCCTTCTGCTGCCACATGTTCTGGTGCGAACCCAACG
CCGCCAGCCTCTCCGAGGCCGTGCAGGCTGCGTGCATGCTCCGCTACCAGAAGTGTCTGG
ATGCCCGCTCCCAGGCCTCCACCTCCTGCCTCCCGGCACCCCCCGCTGAGTCTGTTGCCC
GGCGCGTAGGGTGGACCGTGCGCAGGGGCGTCCAGTCGCTGTGGGGCTCCCTCAAGCCCA
AGCGGCTGGGGTCCCACACCCCCTGAAGCCCCCGGTCCTCCCTACACCTGCTTGCGTTGG
GTCCTGGGGAACTCAGGGTACGGGGCAGGGAGGGGCTCTGCCGGCCATACCTAGACCTCG
GGCCCCCCAGAGCTGCCCCTTCCCCAGTAGCTGGGGTTCCCTGCCTAGGGGCTGGGGAGG
GAGATCCGTCAGGCGAGGAAGTGGCCACATGGATTAATGAGAAGAGGCGCAGGAAGCAAG
GCCAGCCCCAGGCCCTCTAGTCCCACGTTTCTGGGGGTGCAGGAGGACCTGGTCTAGGCC
ATGCCCCACCTTCCTAGGGTCCTGCGGGGGCAGGAGGGGACTGGTCCAGGCATGGGTCCC
CTCCCCTCTGCTCCACGGCACTTCTGCTGTACTGATATCACTAATAAAGTCTGTCTGCCC
TGCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGCCGAACGGCGCAATGCCCGCTGCCTAGTAAACGGACTCTCCCTGGACCACTCGAAAC
TGGTGGACGTCCCTTTCCAAGTGGAATTCCCGGCACCCAAGAACGAGCTGGTACAAAAGT
TCCAAGTCTATTACCTGGGGAATGTGCCTGTTGCTAAACCCGTTGGGGTGGATGTGATCA
ACGGGGCCCTGGAGTCGGTCCTGTCCTCCAGTAGCCGTGAGCAGTGGACACCGAGTCACG
TCAGCGTGGCCCCTGCCACGCTCACCATCTTGCACCAGCAGACCGAGGCCGTGCTGGGGG
AGTGCCGCGTGCGCTTCCTGTCCTTCCTGGCCGTGGGCAGGGATGTCCACACCTTTGCGT
TCATCATGGCTGCTGGCCCGGCCTCCTTCTGCTGCCACATGTTCTGGTGCGAACCCAACG
CCGCCAGCCTCTCCGAGGCCGTGCAGGCTGCGTGCATGCTCCGCTACCAGAAGTGTCTGG
ATGCCCGCTCCCAGGCCTCCACCTCCTGCCTCCCGGCACCCCCCGCTGAGTCTGTTGCCC
GGCGCGTAGGGTGGACCGTGCGCAGGGGCGTCCAGTCGCTGTGGGGCTCCCTCAAGCCCA
AGCGGCTGGGGTCCCACACCCCCTGAAGCCCCCGGTCCTCCCTACACCTGCTTGCGTTGG
GTCCTGGGGAACTCAGGGTACGGGGCAGGGAGGGGCTCTGCCGGCCATACCTAGACCTCG
GGCCCCCCAGAGCTGCCCCTTCCCCAGTAGCTGGGGTTCCCTGCCTAGGGGCTGGGGAGG
GAGATCCGTCAGGCGAGGAAGTGGCCACATGGATTAATGAGAAGAGGCGCAGGAAGCAAG
GCCAGCCCCAGGCCCTCTAGTCCCACGTTTCTGGGGGTGCAGGAGGACCTGGTCTAGGCC
ATGCCCCACCTTCCTAGGGTCCTGCGGGGGCAGGAGGGGACTGGTCCAGGCATGGGTCCC
CTCCCCTCTGCTCCACGGCACTTCTGCTGTACTGATATCACTAATAAAGTCTGTCTGCCC
TGCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|1929899|gb|AAB51603.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|1929899|gb|AAB51603.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               533-795, - strand, RNAz p=0.997406
               

               
               832-979, - strand, RNAz p=0.996748

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               533-795, - strand, RNAz p=0.997406
               

               
               832-979, - strand, RNAz p=0.996748

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               165-302, gnl|bosTau2|chr15 (28626001-28625864)
               

               
               165-302, gnl|Hg17|chr11 (6374022-6373886)
               

               
               165-302, gnl|Mm7|chr7 (101615980-101615835)
               


               
               453-1013, gnl|bosTau2|chr15 (28625507-28624930)
               

               
               453-1013, gnl|Hg17|chr11 (6373512-6372941)
               

               
               453-1013, gnl|Mm7|chr7 (101615476-101614915)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               165-302, gnl|bosTau2|chr15 (28626001-28625864)
               

               
               165-302, gnl|Hg17|chr11 (6374022-6373886)
               

               
               165-302, gnl|Mm7|chr7 (101615980-101615835)
               


               
               453-1013, gnl|bosTau2|chr15 (28625507-28624930)
               

               
               453-1013, gnl|Hg17|chr11 (6373512-6372941)
               

               
               453-1013, gnl|Mm7|chr7 (101615476-101614915)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               fhi (0.508733)
               

               
               hyp (0.42851)
               

               
               ece (0.229305)
               

               
               fcc (0.197785)
               

               
               cag (0.151194)
               

               
               cbr (0.127975)
               

               
               eep (0.122564)
               

               
               med (0.116252)
               

               
               ecc (0.115035)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.508733)
               

               
               hyp (0.42851)
               

               
               ece (0.229305)
               

               
               fcc (0.197785)
               

               
               cag (0.151194)
               

               
               cbr (0.127975)
               

               
               eep (0.122564)
               

               
               med (0.116252)
               

               
               ecc (0.115035)

	533-795, - strand, RNAz p=0.997406
	832-979, - strand, RNAz p=0.996748

	165-302, gnl\|bosTau2\|chr15 (28626001-28625864)
	165-302, gnl\|Hg17\|chr11 (6374022-6373886)
	165-302, gnl\|Mm7\|chr7 (101615980-101615835)

	453-1013, gnl\|bosTau2\|chr15 (28625507-28624930)
	453-1013, gnl\|Hg17\|chr11 (6373512-6372941)
	453-1013, gnl\|Mm7\|chr7 (101615476-101614915)

	fhi (0.508733)
	hyp (0.42851)
	ece (0.229305)
	fcc (0.197785)
	cag (0.151194)
	cbr (0.127975)
	eep (0.122564)
	med (0.116252)
	ecc (0.115035)