Non-Coding RNA Search

Ss1.1-rmed17c_b6.5

Sequence:


               
               CCCAGGACCCTGGGACGGGAGGGGGGTTCCTCCAAGGCTGGAGGAGTCAAGGCCTTCGGA
TGTCTGAGGGGGAAGATAAGCCGCGGTGTCCGGAAATCTGGGTCTGGGCTAGAGGTGGGC
TCTGGGGGCCCGAACTCAGGGACCTGAAAGGCGAGAGCCCGGACTCCTGAGCCTAAGGCT
GGGAGCTTGGCGTGGTGGGGCGGGGGGGTAGATGCCGGGTTGGGAGGCCCCTGATTGATT
TCTGTTTACCGGCTGTCCCCGGCGGGCGGAAGAGCGAATCGCGCCCCATCCATCAACAGG
CTCGCAGCCTCCCTAATAAAAACATTTTACTCCTAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCAGGACCCTGGGACGGGAGGGGGGTTCCTCCAAGGCTGGAGGAGTCAAGGCCTTCGGA
TGTCTGAGGGGGAAGATAAGCCGCGGTGTCCGGAAATCTGGGTCTGGGCTAGAGGTGGGC
TCTGGGGGCCCGAACTCAGGGACCTGAAAGGCGAGAGCCCGGACTCCTGAGCCTAAGGCT
GGGAGCTTGGCGTGGTGGGGCGGGGGGGTAGATGCCGGGTTGGGAGGCCCCTGATTGATT
TCTGTTTACCGGCTGTCCCCGGCGGGCGGAAGAGCGAATCGCGCCCCATCCATCAACAGG
CTCGCAGCCTCCCTAATAAAAACATTTTACTCCTAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               216-337, - strand, RNAz p=0.925455

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               216-337, - strand, RNAz p=0.925455

Aligned organism(s): 7 entry(ies)

More info

Aligned organism(s): 7 entry(ies)

Help | Less info


               
               176-337, gnl|bosTau2|chr18 (44686747-44686590)
               

               
               176-337, gnl|hg17|chr19 (47133882-47134115)
               

               
               176-337, gnl|Hg17|chr19 (47134142-47133995)
               

               
               176-337, gnl|mm7|chr7 (21742880-21743131)
               

               
               176-337, gnl|Mm7|chr7 (21743170-21743011)
               

               
               176-337, gnl|rheMac2|chr19 (48243758-48243991)
               

               
               176-337, gnl|rn3|chr1 (80334294-80334545)

Aligned organism(s): 7 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               176-337, gnl|bosTau2|chr18 (44686747-44686590)
               

               
               176-337, gnl|hg17|chr19 (47133882-47134115)
               

               
               176-337, gnl|Hg17|chr19 (47134142-47133995)
               

               
               176-337, gnl|mm7|chr7 (21742880-21743131)
               

               
               176-337, gnl|Mm7|chr7 (21743170-21743011)
               

               
               176-337, gnl|rheMac2|chr19 (48243758-48243991)
               

               
               176-337, gnl|rn3|chr1 (80334294-80334545)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               nlu (0.191681)
               

               
               med (0.116252)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)
               

               
               med (0.116252)

	176-337, gnl\|bosTau2\|chr18 (44686747-44686590)
	176-337, gnl\|hg17\|chr19 (47133882-47134115)
	176-337, gnl\|Hg17\|chr19 (47134142-47133995)
	176-337, gnl\|mm7\|chr7 (21742880-21743131)
	176-337, gnl\|Mm7\|chr7 (21743170-21743011)
	176-337, gnl\|rheMac2\|chr19 (48243758-48243991)
	176-337, gnl\|rn3\|chr1 (80334294-80334545)