Ss1.1-rmed17c_f9.5
|
CGGATCTCTCAGTGCTGCTCAGCCATGGTTAACCCCACCGTCTTCTTCGACATCGCCGTC
GCCGCCCCGGATCTCTCAGTGCTGCTCAGCCATGGTTAACCCCACCGTCTTCTTCGACAT
CGCCGTCGATGGCGAGCCCTTGGGCCGCGTCTCCTTCGAGCTGTTTGCAGACAAAGTTCC
AAAGACAGCAGAAAACTTCCGTGCTCTGAGCACTGGGGAGAAAGGATTTGGTTATAAAGG
TTCCTGCTTTCACAGAATAATTCCAGGATTTATGTGCCAGGGTGGTGACTTCACACGCCA
TAATGGCACTGGTGGCAAGTCCATCTATGGAGAGAAATTTGATGATGAGAATTTTATCCT
GAAGCATACGGGTCCTGGCATCTTGTCCATGGCAAATGCTGGCCCCAACACAAACGGTTC
CCAGTTTTTCATTTGCACTGCCAAGACTGAGTGGTTGGATGGCAAACATGTGGTCTTTGG
CAAAGTGAAAGAGGGCATGAATATTGTGGAAGCCATGGAGCGCTTTGGGTCCAGGAATGG
CAAGACCAGCAAGAAGATCACCATTGCTGACTGTGGACAAATCTAATAAATTTGACTTGT
TTTATCTTAACCATCAGACCATTCCTTCTGTAGCTCAGGAGAGCACCCCTTTACCCCCAC
CTGCTTGAAATAGCCCATAATCTCTGTGCTCTCACTGCAGTTCCTTGGGTTCCATTTCCT
CATCCCCCTCCAAGTTTAGCTGGATTGCAAAGTTAAGTTTATGATTATGAAATAAAAACT
AAACAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CGGATCTCTCAGTGCTGCTCAGCCATGGTTAACCCCACCGTCTTCTTCGACATCGCCGTC
GCCGCCCCGGATCTCTCAGTGCTGCTCAGCCATGGTTAACCCCACCGTCTTCTTCGACAT
CGCCGTCGATGGCGAGCCCTTGGGCCGCGTCTCCTTCGAGCTGTTTGCAGACAAAGTTCC
AAAGACAGCAGAAAACTTCCGTGCTCTGAGCACTGGGGAGAAAGGATTTGGTTATAAAGG
TTCCTGCTTTCACAGAATAATTCCAGGATTTATGTGCCAGGGTGGTGACTTCACACGCCA
TAATGGCACTGGTGGCAAGTCCATCTATGGAGAGAAATTTGATGATGAGAATTTTATCCT
GAAGCATACGGGTCCTGGCATCTTGTCCATGGCAAATGCTGGCCCCAACACAAACGGTTC
CCAGTTTTTCATTTGCACTGCCAAGACTGAGTGGTTGGATGGCAAACATGTGGTCTTTGG
CAAAGTGAAAGAGGGCATGAATATTGTGGAAGCCATGGAGCGCTTTGGGTCCAGGAATGG
CAAGACCAGCAAGAAGATCACCATTGCTGACTGTGGACAAATCTAATAAATTTGACTTGT
TTTATCTTAACCATCAGACCATTCCTTCTGTAGCTCAGGAGAGCACCCCTTTACCCCCAC
CTGCTTGAAATAGCCCATAATCTCTGTGCTCTCACTGCAGTTCCTTGGGTTCCATTTCCT
CATCCCCCTCCAAGTTTAGCTGGATTGCAAAGTTAAGTTTATGATTATGAAATAAAAACT
AAACAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA
|
|
gi|47523764|ref|NP_999518.1| |
Protein identifier
|
gi|47523764|ref|NP_999518.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
cag (4.53583) |
|
nlu (3.45026) |
|
cly (3.13669) |
|
csp (2.74017) |
|
eye (2.72805) |
|
fcc (2.5712) |
|
ece (2.52236) |
|
nep (2.39102) |
|
fty (2.28592) |
|
ebs (2.01112) |
|
hyp (1.99971) |
|
pty (1.998) |
|
col (1.95008) |
|
cov (1.85014) |
|
med (1.74378) |
|
ecc (1.72553) |
|
ova (1.67872) |
|
thg (1.64828) |
|
ese (1.64453) |
|
fce (1.62955) |
|
elu (1.54143) |
|
mcp (1.53584) |
|
cli (1.52812) |
|
ill (1.40474) |
|
jca (1.36752) |
|
fhi (1.35662) |
|
fat (1.32685) |
|
nco (1.29387) |
|
bla (1.24347) |
|
fbs (1.22742) |
|
eep (1.22564) |
|
eje (1.18601) |
|
pgl (1.18483) |
|
lnt (1.13847) |
|
csk (1.12597) |
|
tra (1.10783) |
|
eru (1.08043) |
|
lun (1.05342) |
|
cut (1.01954) |
|
nbm (0.993246) |
|
nmm (0.929615) |
|
spc (0.906927) |
|
tes (0.831255) |
|
cje (0.826173) |
|
nca (0.821243) |
|
ute (0.796707) |
|
sug (0.763747) |
|
eli (0.759071) |
|
sin (0.69979) |
|
jej (0.692452) |
|
nje (0.66368) |
|
nms (0.641574) |
|
hea (0.613497) |
|
sme (0.610874) |
|
ski (0.586941) |
|
lin (0.582411) |
|
cst (0.560146) |
|
cmu (0.55918) |
|
cga (0.558191) |
|
gul (0.532765) |
|
ton (0.526501) |
|
ret (0.514933) |
|
mgp (0.461361) |
|
hlv (0.417769) |
|
amn (0.417711) |
|
fli (0.405762) |
|
aor (0.390549) |
|
sag (0.36543) |
|
sto (0.359648) |
|
cki (0.330469) |
|
mga (0.32041) |
|
ldo (0.291008) |
|
che (0.272628) |
|
ste (0.270416) |
|
kid (0.259471) |
|
cbe (0.239234) |
|
mas (0.210305) |
|
cty (0.20816) |
|
mgm (0.180343) |
|
rec (0.17307) |
|
duo (0.172801) |
|
isp (0.150376) |
|
ssp (0.13552) |
|
pla (0.133672) |
|
lyg (0.133103) |
|
cbr (0.127975) |
|
cbl (0.114797) |
|
cag (4.53583) |
|
nlu (3.45026) |
|
cly (3.13669) |
|
csp (2.74017) |
|
eye (2.72805) |
|
fcc (2.5712) |
|
ece (2.52236) |
|
nep (2.39102) |
|
fty (2.28592) |
|
ebs (2.01112) |
|
hyp (1.99971) |
|
pty (1.998) |
|
col (1.95008) |
|
cov (1.85014) |
|
med (1.74378) |
|
ecc (1.72553) |
|
ova (1.67872) |
|
thg (1.64828) |
|
ese (1.64453) |
|
fce (1.62955) |
|
elu (1.54143) |
|
mcp (1.53584) |
|
cli (1.52812) |
|
ill (1.40474) |
|
jca (1.36752) |
|
fhi (1.35662) |
|
fat (1.32685) |
|
nco (1.29387) |
|
bla (1.24347) |
|
fbs (1.22742) |
|
eep (1.22564) |
|
eje (1.18601) |
|
pgl (1.18483) |
|
lnt (1.13847) |
|
csk (1.12597) |
|
tra (1.10783) |
|
eru (1.08043) |
|
lun (1.05342) |
|
cut (1.01954) |
|
nbm (0.993246) |
|
nmm (0.929615) |
|
spc (0.906927) |
|
tes (0.831255) |
|
cje (0.826173) |
|
nca (0.821243) |
|
ute (0.796707) |
|
sug (0.763747) |
|
eli (0.759071) |
|
sin (0.69979) |
|
jej (0.692452) |
|
nje (0.66368) |
|
nms (0.641574) |
|
hea (0.613497) |
|
sme (0.610874) |
|
ski (0.586941) |
|
lin (0.582411) |
|
cst (0.560146) |
|
cmu (0.55918) |
|
cga (0.558191) |
|
gul (0.532765) |
|
ton (0.526501) |
|
ret (0.514933) |
|
mgp (0.461361) |
|
hlv (0.417769) |
|
amn (0.417711) |
|
fli (0.405762) |
|
aor (0.390549) |
|
sag (0.36543) |
|
sto (0.359648) |
|
cki (0.330469) |
|
mga (0.32041) |
|
ldo (0.291008) |
|
che (0.272628) |
|
ste (0.270416) |
|
kid (0.259471) |
|
cbe (0.239234) |
|
mas (0.210305) |
|
cty (0.20816) |
|
mgm (0.180343) |
|
rec (0.17307) |
|
duo (0.172801) |
|
isp (0.150376) |
|
ssp (0.13552) |
|
pla (0.133672) |
|
lyg (0.133103) |
|
cbr (0.127975) |
|
cbl (0.114797) |
