Non-Coding RNA Search

Ss1.1-rmed17c_g18.5

Sequence:


               
               GCACGTGACCTGGATCTGGAGCCGGAAGCTGCTTCTGGCAGGGAGCGCCCCCCAGCACCT
AAGGCTGCGATGACTTCTGCACTGGACCCAGGGCTGGAGCGAATCCCAGACCAGCTTGGC
TACCTGGTGCTGAGTGAAGGCGCGGTGTTGGCGTCATCTGGGGATCTAGAAAATGACGAG
CAGGCAGCCAGTGCCATCTCTGAGCTGGTCAGCACTGCCTGCGGTTTCCGGCTGCACCAC
GGCATGAGCATCCCCTTCAAGCGCCTGTCGGTGGTCTTTGGAGAACACACATTGCTCGTG
ACCGTGTCGGGACAGAGGGTGTTTGTGGTGAAGAGGCAGAACCGAGGCCGGGAGCCCATT
GACGTCTGAGCCCGCCGGAGGGCGAGGGGCAGAGGCGGATGGGGCCAGGAGCCTCTGTGA
TGAGGAGGACACAAGCCCCCCCCGCCTCTCCCTTGCCTGCTAGAGCTAAGCCATCTGCAC
ACCCACTTCTCCATCCCCTACCTGGCAGGGCAGGGGCTTGGGGACTTTGTTAAGGAGAGT
GAGGGCAAGGGGCCCTCCCTCTTCCCACCCTCCCTCCTAATAAACATGAGTCTGATGTTC
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCACGTGACCTGGATCTGGAGCCGGAAGCTGCTTCTGGCAGGGAGCGCCCCCCAGCACCT
AAGGCTGCGATGACTTCTGCACTGGACCCAGGGCTGGAGCGAATCCCAGACCAGCTTGGC
TACCTGGTGCTGAGTGAAGGCGCGGTGTTGGCGTCATCTGGGGATCTAGAAAATGACGAG
CAGGCAGCCAGTGCCATCTCTGAGCTGGTCAGCACTGCCTGCGGTTTCCGGCTGCACCAC
GGCATGAGCATCCCCTTCAAGCGCCTGTCGGTGGTCTTTGGAGAACACACATTGCTCGTG
ACCGTGTCGGGACAGAGGGTGTTTGTGGTGAAGAGGCAGAACCGAGGCCGGGAGCCCATT
GACGTCTGAGCCCGCCGGAGGGCGAGGGGCAGAGGCGGATGGGGCCAGGAGCCTCTGTGA
TGAGGAGGACACAAGCCCCCCCCGCCTCTCCCTTGCCTGCTAGAGCTAAGCCATCTGCAC
ACCCACTTCTCCATCCCCTACCTGGCAGGGCAGGGGCTTGGGGACTTTGTTAAGGAGAGT
GAGGGCAAGGGGCCCTCCCTCTTCCCACCCTCCCTCCTAATAAACATGAGTCTGATGTTC
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|62658593|ref|XP_341045.2|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|62658593|ref|XP_341045.2|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               310-423, - strand, RNAz p=0.573749
               

               
               495-600, - strand, RNAz p=0.613575

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               310-423, - strand, RNAz p=0.573749
               

               
               495-600, - strand, RNAz p=0.613575

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               271-600, gnl|bosTau2|chr25 (32620247-32620572)
               

               
               271-600, gnl|Hg17|chr7 (99396140-99396473)
               

               
               271-600, gnl|Mm7|chr5 (137204564-137204910)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               271-600, gnl|bosTau2|chr25 (32620247-32620572)
               

               
               271-600, gnl|Hg17|chr7 (99396140-99396473)
               

               
               271-600, gnl|Mm7|chr5 (137204564-137204910)

Expressed library(ies): 35 entry(ies)

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Expressed library(ies): 35 entry(ies)

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               eje (0.691836)
               

               
               amn (0.417711)
               

               
               nca (0.410621)
               

               
               fty (0.351679)
               

               
               med (0.348756)
               

               
               cag (0.302389)
               

               
               fce (0.271592)
               

               
               ese (0.253004)
               

               
               eru (0.240096)
               

               
               ece (0.229305)
               

               
               nms (0.213858)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               cli (0.152812)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               cst (0.140036)
               

               
               hlv (0.139256)
               

               
               cov (0.132153)
               

               
               cly (0.120642)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)

Expressed library(ies): 35 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eje (0.691836)
               

               
               amn (0.417711)
               

               
               nca (0.410621)
               

               
               fty (0.351679)
               

               
               med (0.348756)
               

               
               cag (0.302389)
               

               
               fce (0.271592)
               

               
               ese (0.253004)
               

               
               eru (0.240096)
               

               
               ece (0.229305)
               

               
               nms (0.213858)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               cli (0.152812)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               cst (0.140036)
               

               
               hlv (0.139256)
               

               
               cov (0.132153)
               

               
               cly (0.120642)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)

	310-423, - strand, RNAz p=0.573749
	495-600, - strand, RNAz p=0.613575

	271-600, gnl\|bosTau2\|chr25 (32620247-32620572)
	271-600, gnl\|Hg17\|chr7 (99396140-99396473)
	271-600, gnl\|Mm7\|chr5 (137204564-137204910)

	eje (0.691836)
	amn (0.417711)
	nca (0.410621)
	fty (0.351679)
	med (0.348756)
	cag (0.302389)
	fce (0.271592)
	ese (0.253004)
	eru (0.240096)
	ece (0.229305)
	nms (0.213858)
	fcc (0.197785)
	col (0.195008)
	nlu (0.191681)
	nep (0.183925)
	ill (0.175593)
	fbs (0.175346)
	duo (0.172801)
	mcp (0.170648)
	fhi (0.169578)
	nje (0.16592)
	cki (0.165235)
	nco (0.161734)
	csp (0.161186)
	cli (0.152812)
	hyp (0.142837)
	lnt (0.142308)
	cst (0.140036)
	hlv (0.139256)
	cov (0.132153)
	cly (0.120642)
	pgl (0.118483)
	ebs (0.118301)
	ecc (0.115035)
	jca (0.11396)