Non-Coding RNA Search

Ss1.1-rmed17c_i13.5

Sequence:


               
               GGGAACATCAGGCCCCGGCCGGGGAGCTTCAGATCCAAGCCAGAGCCACCCTCTGAGGAC
CTGGGCAGCCTGCACCCTGGGGCCCTGCTCTTTCGAGCTGCTGGGCATCCTCCGTCCCTT
TCCCACCATGGCTGATGCCCTCGCCCACGGAGCCGATGTCAACTGGGTCAACGCGAGTCA
GGAGAATGCCACCCCGCTGATCCAGGCCACAGCTGCTAATTCTCTTCTGGCCTGTGAGTT
TCTCCTCCAGAACGGGGCAAGTGTGAACCAAGCGGACAACCAGGGCCGGGGCCCGCTTCA
CCACGCAACCATTCTTGGCCACACCGGGCTGGCCTGCCTGTTCCTGAAACGTGGGGCTGA
TCTGGGAGCTCGAGACTCTGAAGGCAGAGACCCCCTGACCATCGCCGTGGAAAAAGCCAA
CGCTGACATCGTCACTCTGCTCCGACTGGCAAAGATGAGAGAGGCCGATGCGGCCCAGGG
CCAGGCTGGAGATGAGACGTATCTCGACATCTTCCGAGACTTCTCCCTCATGGCATCTGA
CGACCCCGAGAAGCTGAGGCGGCGCAGTCATGACCTCCACACGCTATGATCTCAGACCGT
CGAGGGCCCCGCACCGGCTACTCCTCCCCTCCGCCCCTTCGCCATTAAATCCTCTGTGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGAACATCAGGCCCCGGCCGGGGAGCTTCAGATCCAAGCCAGAGCCACCCTCTGAGGAC
CTGGGCAGCCTGCACCCTGGGGCCCTGCTCTTTCGAGCTGCTGGGCATCCTCCGTCCCTT
TCCCACCATGGCTGATGCCCTCGCCCACGGAGCCGATGTCAACTGGGTCAACGCGAGTCA
GGAGAATGCCACCCCGCTGATCCAGGCCACAGCTGCTAATTCTCTTCTGGCCTGTGAGTT
TCTCCTCCAGAACGGGGCAAGTGTGAACCAAGCGGACAACCAGGGCCGGGGCCCGCTTCA
CCACGCAACCATTCTTGGCCACACCGGGCTGGCCTGCCTGTTCCTGAAACGTGGGGCTGA
TCTGGGAGCTCGAGACTCTGAAGGCAGAGACCCCCTGACCATCGCCGTGGAAAAAGCCAA
CGCTGACATCGTCACTCTGCTCCGACTGGCAAAGATGAGAGAGGCCGATGCGGCCCAGGG
CCAGGCTGGAGATGAGACGTATCTCGACATCTTCCGAGACTTCTCCCTCATGGCATCTGA
CGACCCCGAGAAGCTGAGGCGGCGCAGTCATGACCTCCACACGCTATGATCTCAGACCGT
CGAGGGCCCCGCACCGGCTACTCCTCCCCTCCGCCCCTTCGCCATTAAATCCTCTGTGCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|60359838|dbj|BAD90138.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|60359838|dbj|BAD90138.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               41-140, - strand, RNAz p=0.558487

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               41-140, - strand, RNAz p=0.558487

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AK126509, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AK126509, -

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               41-217, gnl|bosTau2|chr19 (20878955-20878780)
               

               
               41-217, gnl|Hg17|chr17 (7193016-7193210)
               

               
               41-217, gnl|Mm7|chr11 (69965333-69965158)
               


               
               324-439, gnl|bosTau2|chr19 (20878061-20877946)
               

               
               324-439, gnl|Hg17|chr17 (7194166-7194281)
               

               
               324-439, gnl|Mm7|chr11 (69964070-69963955)
               


               
               485-659, gnl|bosTau2|chr19 (20877241-20877062)
               

               
               485-659, gnl|Hg17|chr17 (7195335-7195510)
               

               
               485-659, gnl|Mm7|chr11 (69963303-69963145)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               41-217, gnl|bosTau2|chr19 (20878955-20878780)
               

               
               41-217, gnl|Hg17|chr17 (7193016-7193210)
               

               
               41-217, gnl|Mm7|chr11 (69965333-69965158)
               


               
               324-439, gnl|bosTau2|chr19 (20878061-20877946)
               

               
               324-439, gnl|Hg17|chr17 (7194166-7194281)
               

               
               324-439, gnl|Mm7|chr11 (69964070-69963955)
               


               
               485-659, gnl|bosTau2|chr19 (20877241-20877062)
               

               
               485-659, gnl|Hg17|chr17 (7195335-7195510)
               

               
               485-659, gnl|Mm7|chr11 (69963303-69963145)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               med (0.348756)
               

               
               lnt (0.284616)
               

               
               ill (0.175593)
               

               
               csp (0.161186)
               

               
               eli (0.151814)
               

               
               cag (0.151194)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               med (0.348756)
               

               
               lnt (0.284616)
               

               
               ill (0.175593)
               

               
               csp (0.161186)
               

               
               eli (0.151814)
               

               
               cag (0.151194)

	41-217, gnl\|bosTau2\|chr19 (20878955-20878780)
	41-217, gnl\|Hg17\|chr17 (7193016-7193210)
	41-217, gnl\|Mm7\|chr11 (69965333-69965158)

	324-439, gnl\|bosTau2\|chr19 (20878061-20877946)
	324-439, gnl\|Hg17\|chr17 (7194166-7194281)
	324-439, gnl\|Mm7\|chr11 (69964070-69963955)

	485-659, gnl\|bosTau2\|chr19 (20877241-20877062)
	485-659, gnl\|Hg17\|chr17 (7195335-7195510)
	485-659, gnl\|Mm7\|chr11 (69963303-69963145)

	med (0.348756)
	lnt (0.284616)
	ill (0.175593)
	csp (0.161186)
	eli (0.151814)
	cag (0.151194)