Non-Coding RNA Search

Ss1.1-rmed17c_o6.5

Sequence:


               
               GGGCCTGCACACAGCCCTGCGTTCATCGCCAAAAGCTGCTACCAAGAGAGCCACCGCAAG
CCTCCAAAGATGAAAGGCTTCCTCTTCCTCCTATTCACCATCAGCCTCCTGGTTATGATT
CAGATACAAACTGGAGTCTTGGGAAACCGAACCACCACCAAGAAACCCAAGGGTGGAGCC
CCAGCCCTCAGCGGCCTGGGCAGCGGCGGCATCCTTCTCTTTTTGACCAATGTCCTCATC
CAGCTCTTCCACCTCAGCTGAGGTGACCTGGCCCAGCCCTAGCCCTGTGCCCCTGAGACA
GCTGCCACCATCTCCAGCAACAGAAGCCGCCCCCCAGTCCTTGGGAGGGATTGATGCTGG
AGATGAGCAGGTTGTGAGAATGACAGGCAGTGCCTTGGGGGTGATGGCTGATGCAGGGAG
GTACTGATGTGGAGGGGCAAGCACCACCCAACCCGGCGTCAATAAAGTTGATGTGTGCTT
GGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGCCTGCACACAGCCCTGCGTTCATCGCCAAAAGCTGCTACCAAGAGAGCCACCGCAAG
CCTCCAAAGATGAAAGGCTTCCTCTTCCTCCTATTCACCATCAGCCTCCTGGTTATGATT
CAGATACAAACTGGAGTCTTGGGAAACCGAACCACCACCAAGAAACCCAAGGGTGGAGCC
CCAGCCCTCAGCGGCCTGGGCAGCGGCGGCATCCTTCTCTTTTTGACCAATGTCCTCATC
CAGCTCTTCCACCTCAGCTGAGGTGACCTGGCCCAGCCCTAGCCCTGTGCCCCTGAGACA
GCTGCCACCATCTCCAGCAACAGAAGCCGCCCCCCAGTCCTTGGGAGGGATTGATGCTGG
AGATGAGCAGGTTGTGAGAATGACAGGCAGTGCCTTGGGGGTGATGGCTGATGCAGGGAG
GTACTGATGTGGAGGGGCAAGCACCACCCAACCCGGCGTCAATAAAGTTGATGTGTGCTT
GGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q56JW8_BOVIN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q56JW8_BOVIN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               201-318, - strand, RNAz p=0.685332

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               201-318, - strand, RNAz p=0.685332

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               121-483, gnl|bosTau2|chr2 (78175782-78176153)
               

               
               121-483, gnl|Hg17|chr1 (26330801-26331156)
               

               
               121-483, gnl|Mm7|chr4 (133472336-133471969)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               121-483, gnl|bosTau2|chr2 (78175782-78176153)
               

               
               121-483, gnl|Hg17|chr1 (26330801-26331156)
               

               
               121-483, gnl|Mm7|chr4 (133472336-133471969)

Expressed library(ies): 16 entry(ies)

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Expressed library(ies): 16 entry(ies)

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               fty (4.57183)
               

               
               med (1.62753)
               

               
               cly (0.603209)
               

               
               nbm (0.496623)
               

               
               cag (0.453583)
               

               
               csp (0.322373)
               

               
               ill (0.175593)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               eli (0.151814)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               jej (0.0989218)

Expressed library(ies): 16 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (4.57183)
               

               
               med (1.62753)
               

               
               cly (0.603209)
               

               
               nbm (0.496623)
               

               
               cag (0.453583)
               

               
               csp (0.322373)
               

               
               ill (0.175593)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               eli (0.151814)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               jej (0.0989218)

	121-483, gnl\|bosTau2\|chr2 (78175782-78176153)
	121-483, gnl\|Hg17\|chr1 (26330801-26331156)
	121-483, gnl\|Mm7\|chr4 (133472336-133471969)

	fty (4.57183)
	med (1.62753)
	cly (0.603209)
	nbm (0.496623)
	cag (0.453583)
	csp (0.322373)
	ill (0.175593)
	duo (0.172801)
	mcp (0.170648)
	cki (0.165235)
	nco (0.161734)
	eli (0.151814)
	pty (0.142714)
	lnt (0.142308)
	nca (0.136874)
	jej (0.0989218)