Non-Coding RNA Search

Ss1.1-rmed18c_d13.5

Sequence:


               
               TGCCCCTGCGGCCACACTGTGTGCTGCGAGGGCTGCGCCACCCAGCTCCAGTCATGTCCC
GTTTGCAGGTCGCGAGTGGACCACGTCCAGCATGTCTACCTGCCGACCCACACCAGTCTC
CTGAACCTGACTGTGATCTGACCTGCTGTGCACTTACCAGACGTGCCGTGTCTCCATGAA
CTGCACTGTTAGAAACTATAAAAATGATAGACTGTGGAGAGAATAAATACTCCACCACCC
ATCTGCCATGCAACGTTTAGGGACAAAACAAAAGGAAGAATAGTGAGAATACGATTACTC
CTCACCGCCAACATGTCCCACACGTAGAATCAGCACCTCCAGGGTGACGACGAGGAAGAG
CTCTGGGCCCCAAACACATTCCTTGAACTTTGCTTCTTTTTTATGATCTAGCGAAGGAAT
CAGGATCAAGTGAAGGAATGGACGTCGGTTCCGTGGCAACATGGCCAAAGAGTGGGGACC
TTTTAGAAAATAATGTTGTAAGTCTCCCTAACATATCCCGAGGTAAGTTACCTACCTGCA
AGCCAATTTTGTAAGAGTTCCTTTTAAGGATTTACTTGGGTTTTTTAGTACGGGTCACGG
AGCGCCAGACATTTTTAATAGGAACATTTTTCTTCAAAGAGATAGTCATTGTTTTCATGT
TATGTCTGTTTTTCTAACTTGTTCAAGAATAATTGGGAGGCCAACAGTTAAAACTTTATT
TGGGGACTTTTTAAAGGTAGACAACAAGTTGTCGGATTTAAACCAGTCTGGCTAGTAGAA
AACAGATCACCACGTGGCTGGTTTCCTATCTCTTCTCCCTCTCCTCTTCCCCAAGCCTTT
CACTTATAAAATGCTGCCAGGTTGGTTAGATGAGTTCTATGGAGTAGTCAGCACTCCTTG
GGCTTCTTGAGTTTGTGGAATATTTTAAGGCTGGGAAGGGGGTGTGTGTTCCTTGGGAAG
AGAGAGCATTGCTTACTGCGACGAAGCTCTGTGGTGTACAAATGAGGGTGGTTCGTGAGT
TCTCCCATGCACCCTGCTCCAGCCTCACCCAGTGGGGTTGCTTTTGCTTGAGCCATCAAG
CCTTTTACAGCCTTATCATAAATATCTTAGGTATTGTATGCTTTTTTTTTTTTGTACTAT
ATGCTTAAGTGTTAACTTTTCGTTGTCCCTCTATAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCCCCTGCGGCCACACTGTGTGCTGCGAGGGCTGCGCCACCCAGCTCCAGTCATGTCCC
GTTTGCAGGTCGCGAGTGGACCACGTCCAGCATGTCTACCTGCCGACCCACACCAGTCTC
CTGAACCTGACTGTGATCTGACCTGCTGTGCACTTACCAGACGTGCCGTGTCTCCATGAA
CTGCACTGTTAGAAACTATAAAAATGATAGACTGTGGAGAGAATAAATACTCCACCACCC
ATCTGCCATGCAACGTTTAGGGACAAAACAAAAGGAAGAATAGTGAGAATACGATTACTC
CTCACCGCCAACATGTCCCACACGTAGAATCAGCACCTCCAGGGTGACGACGAGGAAGAG
CTCTGGGCCCCAAACACATTCCTTGAACTTTGCTTCTTTTTTATGATCTAGCGAAGGAAT
CAGGATCAAGTGAAGGAATGGACGTCGGTTCCGTGGCAACATGGCCAAAGAGTGGGGACC
TTTTAGAAAATAATGTTGTAAGTCTCCCTAACATATCCCGAGGTAAGTTACCTACCTGCA
AGCCAATTTTGTAAGAGTTCCTTTTAAGGATTTACTTGGGTTTTTTAGTACGGGTCACGG
AGCGCCAGACATTTTTAATAGGAACATTTTTCTTCAAAGAGATAGTCATTGTTTTCATGT
TATGTCTGTTTTTCTAACTTGTTCAAGAATAATTGGGAGGCCAACAGTTAAAACTTTATT
TGGGGACTTTTTAAAGGTAGACAACAAGTTGTCGGATTTAAACCAGTCTGGCTAGTAGAA
AACAGATCACCACGTGGCTGGTTTCCTATCTCTTCTCCCTCTCCTCTTCCCCAAGCCTTT
CACTTATAAAATGCTGCCAGGTTGGTTAGATGAGTTCTATGGAGTAGTCAGCACTCCTTG
GGCTTCTTGAGTTTGTGGAATATTTTAAGGCTGGGAAGGGGGTGTGTGTTCCTTGGGAAG
AGAGAGCATTGCTTACTGCGACGAAGCTCTGTGGTGTACAAATGAGGGTGGTTCGTGAGT
TCTCCCATGCACCCTGCTCCAGCCTCACCCAGTGGGGTTGCTTTTGCTTGAGCCATCAAG
CCTTTTACAGCCTTATCATAAATATCTTAGGTATTGTATGCTTTTTTTTTTTTGTACTAT
ATGCTTAAGTGTTAACTTTTCGTTGTCCCTCTATAC

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               47-1174, gnl|bosTau2|chr23 (36243369-36242224)
               

               
               47-1174, gnl|Hg17|chr6 (16254867-16256025)
               

               
               47-1174, gnl|Mm7|chr13 (44860166-44861331)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               47-1174, gnl|bosTau2|chr23 (36243369-36242224)
               

               
               47-1174, gnl|Hg17|chr6 (16254867-16256025)
               

               
               47-1174, gnl|Mm7|chr13 (44860166-44861331)

Expressed library(ies): 10 entry(ies)

More info

Expressed library(ies): 10 entry(ies)

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               cty (0.41632)
               

               
               gul (0.177588)
               

               
               ill (0.175593)
               

               
               eye (0.170503)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               hlv (0.139256)
               

               
               pla (0.133672)
               

               
               med (0.116252)
               

               
               cbl (0.114797)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.41632)
               

               
               gul (0.177588)
               

               
               ill (0.175593)
               

               
               eye (0.170503)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               hlv (0.139256)
               

               
               pla (0.133672)
               

               
               med (0.116252)
               

               
               cbl (0.114797)

	47-1174, gnl\|bosTau2\|chr23 (36243369-36242224)
	47-1174, gnl\|Hg17\|chr6 (16254867-16256025)
	47-1174, gnl\|Mm7\|chr13 (44860166-44861331)

	cty (0.41632)
	gul (0.177588)
	ill (0.175593)
	eye (0.170503)
	csk (0.140746)
	cst (0.140036)
	hlv (0.139256)
	pla (0.133672)
	med (0.116252)
	cbl (0.114797)