Ss1.1-rmed18c_l1.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGAGCTGGGACAGGTGGAGTACGTCTTCACGGACAAGACGGGCACCCTCACGGAGAACAA CATGGAGTTCCGGGAGTGCTGCGTGGAGGGCCACGTGTACGTGCCCCACGCCGTCTGCAA CGGGCAGGTGCTCCCCGACGCCGCCATGGACATGATCGACGCCTCCCCGGACGCCAGCGG GCGGGAGCGAGAGGAGCTGTTTTTCCGGGCACTCTGTCTCTGCCACACCATCCAGGTGAA GGATGACGACGAGGTGGACGGGCCCAGGAAGTCGCCGGACTCCGGCAAGCGCTGTGTGTA CATCTCGTCCTCGCCCGACGAGGTGGCCCTGGTGGAAGGCATCCAGAGATTGGGTTTCAC GTACCTGCGGCTGAAGGACAGTCACATGGAGCTTATGAACAGAGACAATGGCATTGAGAG GTTTGAATTGCTGGAAGTACTGAGTTTGGACTCTGTAAGAAGGAGAATGAGTGTAATTGT CAAATCTGCTACAGGAGAAATTTATCTCTTTTGCAAAGGAGCCGATTCCTCCATATTCCC CCGAGTGATAGAGGGCAAGGTGGAGCAGATCCAGTCCCGCGTGGAGCACAACGCCGTGGA GGGGCTCCGGACCTTGTGTGTCGCCTACAAGAGGCTGGAGCCGCAGGCCTATGCGGGCAT CTGCGGGCTGCTGCAGGATGCCAAGGTGGCGCTTCAAGACCGGGAGAAGAAGCTAGCGGA GGCCTATGAGCAGATAGAGACAGACCTGATCCTGCTCGGCGCCACGGCCGTGGAGGACCG GCTGCAGGAGAAGGCGGCCGACACCATCGAGGCGCTGCAGAAGGCGGGCATCAAGGTGTG GGTGCTCACGGGCGACAAGATGGAGACGGCGGCTGCCACCTGCTACGCCTGCAAGCTCTT CCGCAGGACCACGCGGCTGCTGGAGCTCACGACCAAGCGGCTCGAGGAGCAGAGCCTGCA TGACGTGCTGTTTGAGCTGAGCAAGACCGTTCTGCGCAGCAGCGCCAGCCTGACCACGGA CAGCTTCTCCGGGCTCTCAGCAGACGCGCCGGACTTCGGGCTGATCATTGACGGAGCGGC GCTGTCTCTGGTGATGAAGCCCCGGGAGGACGGGAGCTCCGGCAACTACCGGGAGCTCTT CCTGGAGGTGTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGAGCTGGGACAGGTGGAGTACGTCTTCACGGACAAGACGGGCACCCTCACGGAGAACAA CATGGAGTTCCGGGAGTGCTGCGTGGAGGGCCACGTGTACGTGCCCCACGCCGTCTGCAA CGGGCAGGTGCTCCCCGACGCCGCCATGGACATGATCGACGCCTCCCCGGACGCCAGCGG GCGGGAGCGAGAGGAGCTGTTTTTCCGGGCACTCTGTCTCTGCCACACCATCCAGGTGAA GGATGACGACGAGGTGGACGGGCCCAGGAAGTCGCCGGACTCCGGCAAGCGCTGTGTGTA CATCTCGTCCTCGCCCGACGAGGTGGCCCTGGTGGAAGGCATCCAGAGATTGGGTTTCAC GTACCTGCGGCTGAAGGACAGTCACATGGAGCTTATGAACAGAGACAATGGCATTGAGAG GTTTGAATTGCTGGAAGTACTGAGTTTGGACTCTGTAAGAAGGAGAATGAGTGTAATTGT CAAATCTGCTACAGGAGAAATTTATCTCTTTTGCAAAGGAGCCGATTCCTCCATATTCCC CCGAGTGATAGAGGGCAAGGTGGAGCAGATCCAGTCCCGCGTGGAGCACAACGCCGTGGA GGGGCTCCGGACCTTGTGTGTCGCCTACAAGAGGCTGGAGCCGCAGGCCTATGCGGGCAT CTGCGGGCTGCTGCAGGATGCCAAGGTGGCGCTTCAAGACCGGGAGAAGAAGCTAGCGGA GGCCTATGAGCAGATAGAGACAGACCTGATCCTGCTCGGCGCCACGGCCGTGGAGGACCG GCTGCAGGAGAAGGCGGCCGACACCATCGAGGCGCTGCAGAAGGCGGGCATCAAGGTGTG GGTGCTCACGGGCGACAAGATGGAGACGGCGGCTGCCACCTGCTACGCCTGCAAGCTCTT CCGCAGGACCACGCGGCTGCTGGAGCTCACGACCAAGCGGCTCGAGGAGCAGAGCCTGCA TGACGTGCTGTTTGAGCTGAGCAAGACCGTTCTGCGCAGCAGCGCCAGCCTGACCACGGA CAGCTTCTCCGGGCTCTCAGCAGACGCGCCGGACTTCGGGCTGATCATTGACGGAGCGGC GCTGTCTCTGGTGATGAAGCCCCGGGAGGACGGGAGCTCCGGCAACTACCGGGAGCTCTT CCTGGAGGTGTG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 780-898, + strand, RNAz p=0.538108 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 780-898, + strand, RNAz p=0.538108 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of AB028944, + |
| Aligned organism(s): 59 entry(ies) | More info |
| Aligned organism(s): 59 entry(ies) | Help | Less info |
| 11-185, gnl|bosTau2|chr12 (46984683-46984506) | |
| 11-185, gnl|Hg17|chr13 (112533687-112533864) | |
| 11-185, gnl|Mm7|chr8 (12805302-12805479) | |
| 493-610, gnl|bosTau2|chr12 (46976913-46976796) | |
| 493-610, gnl|canFam2|chr22 (63357159-63357302) | |
| 493-610, gnl|danRer3|chr1 (46687133-46687261) | |
| 493-610, gnl|dasNov1|scaffold_56522 (12119-11991) | |
| 493-610, gnl|echTel1|scaffold_217670 (3581-3719) | |
| 493-610, gnl|fr1|chrUn (200862037-200861902) | |
| 493-610, gnl|galGal2|chr1 (130798835-130798697) | |
| 493-610, gnl|hg17|chr13 (112544573-112544711) | |
| 493-610, gnl|Hg17|chr13 (112544589-112544702) | |
| 493-610, gnl|loxAfr1|scaffold_50532 (5030-5177) | |
| 493-610, gnl|mm7|chr8 (12812108-12812241) | |
| 493-610, gnl|Mm7|chr8 (12812130-12812240) | |
| 493-610, gnl|monDom2|scaffold_11 (32950582-32950452) | |
| 493-610, gnl|panTro1|chr14 (96158349-96158487) | |
| 493-610, gnl|rheMac2|chr17 (92969052-92969190) | |
| 493-610, gnl|rn3|chr16 (81527272-81527139) | |
| 493-610, gnl|tetNig1|chr2 (8755943-8755805) | |
| 493-610, gnl|xenTro1|scaffold_563 (522202-522325) | |
| 780-1033, gnl|bosTau2|chr12 (46971317-46971064) | |
| 780-1033, gnl|canFam2|chr22 (63365783-63365995) | |
| 780-1033, gnl|danRer3|chr1 (46697931-46698143) | |
| 780-1033, gnl|dasNov1|scaffold_99442 (2977-3189) | |
| 780-1033, gnl|echTel1|scaffold_324229 (47041-46829) | |
| 780-1033, gnl|fr1|chrUn (200860747-200860535) | |
| 780-1033, gnl|galGal2|chr1 (130795943-130795731) | |
| 780-1033, gnl|hg17|chr13 (112556592-112556804) | |
| 780-1033, gnl|Hg17|chr13 (112556593-112556846) | |
| 780-1033, gnl|loxAfr1|scaffold_6035 (17313-17100) | |
| 780-1033, gnl|mm7|chr8 (12818622-12818834) | |
| 780-1033, gnl|Mm7|chr8 (12818623-12818876) | |
| 780-1033, gnl|monDom2|scaffold_11 (32942663-32942451) | |
| 780-1033, gnl|oryCun1|scaffold_98553 (10911-11123) | |
| 780-1033, gnl|panTro1|chr14 (96170531-96170743) | |
| 780-1033, gnl|rheMac2|chr17 (92980980-92981192) | |
| 780-1033, gnl|rn3|chr16 (81521376-81521164) | |
| 780-1033, gnl|tetNig1|chr2 (8755074-8754862) | |
| 780-1033, gnl|xenTro1|scaffold_563 (525993-526205) | |
| 1034-1146, gnl|bosTau2|chr12 (46969691-46969579) | |
| 1034-1146, gnl|canFam2|chr22 (63367466-63367647) | |
| 1034-1146, gnl|danRer3|chr1 (46699405-46699592) | |
| 1034-1146, gnl|dasNov1|scaffold_99442 (4591-4772) | |
| 1034-1146, gnl|echTel1|scaffold_324229 (45509-45328) | |
| 1034-1146, gnl|fr1|chrUn (200860433-200860250) | |
| 1034-1146, gnl|galGal2|chr1 (130793317-130793137) | |
| 1034-1146, gnl|hg17|chr13 (112558223-112558404) | |
| 1034-1146, gnl|Hg17|chr13 (112558227-112558339) | |
| 1034-1146, gnl|loxAfr1|scaffold_6035 (15743-15562) | |
| 1034-1146, gnl|mm7|chr8 (12820259-12820444) | |
| 1034-1146, gnl|Mm7|chr8 (12820262-12820377) | |
| 1034-1146, gnl|monDom2|scaffold_11 (32939022-32938850) | |
| 1034-1146, gnl|oryCun1|scaffold_187838 (25328-25168) | |
| 1034-1146, gnl|panTro1|chr14 (96172260-96172441) | |
| 1034-1146, gnl|rheMac2|chr17 (92982644-92982825) | |
| 1034-1146, gnl|rn3|chr16 (81519786-81519601) | |
| 1034-1146, gnl|tetNig1|chr2 (8754769-8754586) | |
| 1034-1146, gnl|xenTro1|scaffold_563 (527192-527373) |
| Aligned organism(s): 59 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 11-185, gnl|bosTau2|chr12 (46984683-46984506) | |
| 11-185, gnl|Hg17|chr13 (112533687-112533864) | |
| 11-185, gnl|Mm7|chr8 (12805302-12805479) | |
| 493-610, gnl|bosTau2|chr12 (46976913-46976796) | |
| 493-610, gnl|canFam2|chr22 (63357159-63357302) | |
| 493-610, gnl|danRer3|chr1 (46687133-46687261) | |
| 493-610, gnl|dasNov1|scaffold_56522 (12119-11991) | |
| 493-610, gnl|echTel1|scaffold_217670 (3581-3719) | |
| 493-610, gnl|fr1|chrUn (200862037-200861902) | |
| 493-610, gnl|galGal2|chr1 (130798835-130798697) | |
| 493-610, gnl|hg17|chr13 (112544573-112544711) | |
| 493-610, gnl|Hg17|chr13 (112544589-112544702) | |
| 493-610, gnl|loxAfr1|scaffold_50532 (5030-5177) | |
| 493-610, gnl|mm7|chr8 (12812108-12812241) | |
| 493-610, gnl|Mm7|chr8 (12812130-12812240) | |
| 493-610, gnl|monDom2|scaffold_11 (32950582-32950452) | |
| 493-610, gnl|panTro1|chr14 (96158349-96158487) | |
| 493-610, gnl|rheMac2|chr17 (92969052-92969190) | |
| 493-610, gnl|rn3|chr16 (81527272-81527139) | |
| 493-610, gnl|tetNig1|chr2 (8755943-8755805) | |
| 493-610, gnl|xenTro1|scaffold_563 (522202-522325) | |
| 780-1033, gnl|bosTau2|chr12 (46971317-46971064) | |
| 780-1033, gnl|canFam2|chr22 (63365783-63365995) | |
| 780-1033, gnl|danRer3|chr1 (46697931-46698143) | |
| 780-1033, gnl|dasNov1|scaffold_99442 (2977-3189) | |
| 780-1033, gnl|echTel1|scaffold_324229 (47041-46829) | |
| 780-1033, gnl|fr1|chrUn (200860747-200860535) | |
| 780-1033, gnl|galGal2|chr1 (130795943-130795731) | |
| 780-1033, gnl|hg17|chr13 (112556592-112556804) | |
| 780-1033, gnl|Hg17|chr13 (112556593-112556846) | |
| 780-1033, gnl|loxAfr1|scaffold_6035 (17313-17100) | |
| 780-1033, gnl|mm7|chr8 (12818622-12818834) | |
| 780-1033, gnl|Mm7|chr8 (12818623-12818876) | |
| 780-1033, gnl|monDom2|scaffold_11 (32942663-32942451) | |
| 780-1033, gnl|oryCun1|scaffold_98553 (10911-11123) | |
| 780-1033, gnl|panTro1|chr14 (96170531-96170743) | |
| 780-1033, gnl|rheMac2|chr17 (92980980-92981192) | |
| 780-1033, gnl|rn3|chr16 (81521376-81521164) | |
| 780-1033, gnl|tetNig1|chr2 (8755074-8754862) | |
| 780-1033, gnl|xenTro1|scaffold_563 (525993-526205) | |
| 1034-1146, gnl|bosTau2|chr12 (46969691-46969579) | |
| 1034-1146, gnl|canFam2|chr22 (63367466-63367647) | |
| 1034-1146, gnl|danRer3|chr1 (46699405-46699592) | |
| 1034-1146, gnl|dasNov1|scaffold_99442 (4591-4772) | |
| 1034-1146, gnl|echTel1|scaffold_324229 (45509-45328) | |
| 1034-1146, gnl|fr1|chrUn (200860433-200860250) | |
| 1034-1146, gnl|galGal2|chr1 (130793317-130793137) | |
| 1034-1146, gnl|hg17|chr13 (112558223-112558404) | |
| 1034-1146, gnl|Hg17|chr13 (112558227-112558339) | |
| 1034-1146, gnl|loxAfr1|scaffold_6035 (15743-15562) | |
| 1034-1146, gnl|mm7|chr8 (12820259-12820444) | |
| 1034-1146, gnl|Mm7|chr8 (12820262-12820377) | |
| 1034-1146, gnl|monDom2|scaffold_11 (32939022-32938850) | |
| 1034-1146, gnl|oryCun1|scaffold_187838 (25328-25168) | |
| 1034-1146, gnl|panTro1|chr14 (96172260-96172441) | |
| 1034-1146, gnl|rheMac2|chr17 (92982644-92982825) | |
| 1034-1146, gnl|rn3|chr16 (81519786-81519601) | |
| 1034-1146, gnl|tetNig1|chr2 (8754769-8754586) | |
| 1034-1146, gnl|xenTro1|scaffold_563 (527192-527373) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| med (0.116252) |