Ss1.1-rmed19c_o17.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTCACGATGTTTCCCTTGGCCAAAAACGCACTAAGTCGTCTCAGAGTTCGAAACATTCAG CAAACAAGGGCAAGGCAGAACCACCAGAAGCGGGCACCTGATTTCCATGACAAATATGGT AATGCTATATTAGCTAGTGGAGCCACTTTCTGTGTTGCTGTATGGGCATATACAGCAACA CAGATGGGAATAGAATGGAACCTGTCCCCTGTGGGCAGAGTCACCCCAAAGGAATGGAGA GAAGAATAATCATCCCATCTGGTTTAATACTGAATGGTTTCAAAACCACCTCATAATTGA TGCCAAGTAAAAGCACTGTGTACCCATTAAAATATGGCATGATTGAAGAAATAAAGTATA TTTGAAACCTTCAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTCACGATGTTTCCCTTGGCCAAAAACGCACTAAGTCGTCTCAGAGTTCGAAACATTCAG CAAACAAGGGCAAGGCAGAACCACCAGAAGCGGGCACCTGATTTCCATGACAAATATGGT AATGCTATATTAGCTAGTGGAGCCACTTTCTGTGTTGCTGTATGGGCATATACAGCAACA CAGATGGGAATAGAATGGAACCTGTCCCCTGTGGGCAGAGTCACCCCAAAGGAATGGAGA GAAGAATAATCATCCCATCTGGTTTAATACTGAATGGTTTCAAAACCACCTCATAATTGA TGCCAAGTAAAAGCACTGTGTACCCATTAAAATATGGCATGATTGAAGAAATAAAGTATA TTTGAAACCTTCAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 54-238, - strand, RNAz p=0.978731 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 54-238, - strand, RNAz p=0.978731 |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 2-384, gnl|bosTau2|chr17 (33342658-33343040) | |
| 2-384, gnl|canFam2|chr17 (28687906-28688149) | |
| 2-384, gnl|canFam2|chr29 (3323021-3323347) | |
| 2-384, gnl|dasNov1|scaffold_9125 (103837-104181) | |
| 2-384, gnl|dasNov1|scaffold_9125 (103856-104102) | |
| 2-384, gnl|echTel1|scaffold_204117 (3210-2867) | |
| 2-384, gnl|echTel1|scaffold_204117 (3191-2946) | |
| 2-384, gnl|hg17|chr1 (159680862-159681203) | |
| 2-384, gnl|hg17|chr10 (49424402-49424650) | |
| 2-384, gnl|Hg17|chr22 (33915494-33914947) | |
| 2-384, gnl|loxAfr1|scaffold_60147 (25876-26184) | |
| 2-384, gnl|loxAfr1|scaffold_60168 (6243-6003) | |
| 2-384, gnl|mm7|chr1 (151452491-151452746) | |
| 2-384, gnl|Mm7|chr1 (151452869-151452481) | |
| 2-384, gnl|mm7|chr6 (50930891-50930567) | |
| 2-384, gnl|monDom2|scaffold_19 (25801626-25801299) | |
| 2-384, gnl|monDom2|scaffold_19 (25801626-25801378) | |
| 2-384, gnl|oryCun1|scaffold_89888 (3586-3929) | |
| 2-384, gnl|oryCun1|scaffold_89888 (3606-3850) | |
| 2-384, gnl|panTro1|chr1 (141878923-141879264) | |
| 2-384, gnl|panTro1|chr8 (49751968-49752216) | |
| 2-384, gnl|rheMac2|chr1 (192899227-192899564) | |
| 2-384, gnl|rheMac2|chr9 (48069705-48069458) | |
| 2-384, gnl|rn3|chr10 (73218318-73218570) | |
| 2-384, gnl|rn3|chrX (122144438-122144787) | |
| 3-171, gnl|bosTau2|chr11 (62131477-62131309) | |
| 3-171, gnl|Hg17|chr1 (54267546-54267713) | |
| 3-171, gnl|Mm7|chr2 (91492643-91492475) | |
| 214-360, gnl|bosTau2|chr11 (62130754-62130612) | |
| 214-360, gnl|Hg17|chr1 (54267757-54267892) | |
| 214-360, gnl|Mm7|chr2 (91492432-91492286) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-384, gnl|bosTau2|chr17 (33342658-33343040) | |
| 2-384, gnl|canFam2|chr17 (28687906-28688149) | |
| 2-384, gnl|canFam2|chr29 (3323021-3323347) | |
| 2-384, gnl|dasNov1|scaffold_9125 (103837-104181) | |
| 2-384, gnl|dasNov1|scaffold_9125 (103856-104102) | |
| 2-384, gnl|echTel1|scaffold_204117 (3210-2867) | |
| 2-384, gnl|echTel1|scaffold_204117 (3191-2946) | |
| 2-384, gnl|hg17|chr1 (159680862-159681203) | |
| 2-384, gnl|hg17|chr10 (49424402-49424650) | |
| 2-384, gnl|Hg17|chr22 (33915494-33914947) | |
| 2-384, gnl|loxAfr1|scaffold_60147 (25876-26184) | |
| 2-384, gnl|loxAfr1|scaffold_60168 (6243-6003) | |
| 2-384, gnl|mm7|chr1 (151452491-151452746) | |
| 2-384, gnl|Mm7|chr1 (151452869-151452481) | |
| 2-384, gnl|mm7|chr6 (50930891-50930567) | |
| 2-384, gnl|monDom2|scaffold_19 (25801626-25801299) | |
| 2-384, gnl|monDom2|scaffold_19 (25801626-25801378) | |
| 2-384, gnl|oryCun1|scaffold_89888 (3586-3929) | |
| 2-384, gnl|oryCun1|scaffold_89888 (3606-3850) | |
| 2-384, gnl|panTro1|chr1 (141878923-141879264) | |
| 2-384, gnl|panTro1|chr8 (49751968-49752216) | |
| 2-384, gnl|rheMac2|chr1 (192899227-192899564) | |
| 2-384, gnl|rheMac2|chr9 (48069705-48069458) | |
| 2-384, gnl|rn3|chr10 (73218318-73218570) | |
| 2-384, gnl|rn3|chrX (122144438-122144787) | |
| 3-171, gnl|bosTau2|chr11 (62131477-62131309) | |
| 3-171, gnl|Hg17|chr1 (54267546-54267713) | |
| 3-171, gnl|Mm7|chr2 (91492643-91492475) | |
| 214-360, gnl|bosTau2|chr11 (62130754-62130612) | |
| 214-360, gnl|Hg17|chr1 (54267757-54267892) | |
| 214-360, gnl|Mm7|chr2 (91492432-91492286) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| med (0.232504) | |
| mcp (0.170648) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| ebs (0.118301) | |
| jca (0.11396) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| med (0.232504) | |
| mcp (0.170648) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| ebs (0.118301) | |
| jca (0.11396) |