Non-Coding RNA Search

Ss1.1-rmed20c_a13.5

Sequence:


               
               CTTCAGGAAGAGCATTCACATTGCATCAGAGCAGAGACTTATAGCCAGTAAGGGAAGCAA
GCAGCGTAGTCGTCTTTCCATCATGGCCCAGTACCTCTGCGACGTTCAGCACGTCTTGAC
AATTCCAGGTCGGGCTTTTGTCCCCAAACCAGAGGTGGATGTGGGGGTGGTGCACTTTAC
CCCCCTGACTCAGCCCAAGATAGAGCAGCCGTTCAAGCTGGTGGAAAAGTGGTTCAGAAT
GCATTTCAGTTCCGAAGGAAATACTGCTATCGAGGGCTTGGAATGTTATTCCCTGAAGCT
CAGCGCATGGAACGCACTGGGAAACTGTTAGAGTCGGCGGACGTGGACCCTACTCTTCGA
CCCACCCAGCTCTCGGTCTCTCATTTCCAGAGCCTCTGTGACGTGTACCGGAAAATGTGT
GATGAAGACCCACACCTCTTTGCTTACAACTTCAGAGAAGAACTCAGGCACACGTCAGAA
AAGAGAGAGAGAGATGACGGGGAGAGTTAGACTGCAGCTGCTGCCCGAGGCCCCAGCAGC
CTGCCGGGGCCCACGTGCAGTGGTGAGCTGCTCTGGGTGCTCACCCGCTGCGCTGCGACC
TCTTTCCCTTGTACGGCTTGGTGAAGAGAATAAACGTCATCAAATGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTCAGGAAGAGCATTCACATTGCATCAGAGCAGAGACTTATAGCCAGTAAGGGAAGCAA
GCAGCGTAGTCGTCTTTCCATCATGGCCCAGTACCTCTGCGACGTTCAGCACGTCTTGAC
AATTCCAGGTCGGGCTTTTGTCCCCAAACCAGAGGTGGATGTGGGGGTGGTGCACTTTAC
CCCCCTGACTCAGCCCAAGATAGAGCAGCCGTTCAAGCTGGTGGAAAAGTGGTTCAGAAT
GCATTTCAGTTCCGAAGGAAATACTGCTATCGAGGGCTTGGAATGTTATTCCCTGAAGCT
CAGCGCATGGAACGCACTGGGAAACTGTTAGAGTCGGCGGACGTGGACCCTACTCTTCGA
CCCACCCAGCTCTCGGTCTCTCATTTCCAGAGCCTCTGTGACGTGTACCGGAAAATGTGT
GATGAAGACCCACACCTCTTTGCTTACAACTTCAGAGAAGAACTCAGGCACACGTCAGAA
AAGAGAGAGAGAGATGACGGGGAGAGTTAGACTGCAGCTGCTGCCCGAGGCCCCAGCAGC
CTGCCGGGGCCCACGTGCAGTGGTGAGCTGCTCTGGGTGCTCACCCGCTGCGCTGCGACC
TCTTTCCCTTGTACGGCTTGGTGAAGAGAATAAACGTCATCAAATGAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55627850|ref|XP_518880.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55627850|ref|XP_518880.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               281-639, gnl|bosTau2|chr9 (53932217-53932554)
               

               
               281-639, gnl|Hg17|chr6 (155671330-155670920)
               

               
               281-639, gnl|Mm7|chr17 (3519538-3519146)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               281-639, gnl|bosTau2|chr9 (53932217-53932554)
               

               
               281-639, gnl|Hg17|chr6 (155671330-155670920)
               

               
               281-639, gnl|Mm7|chr17 (3519538-3519146)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               rec (0.17307)
               

               
               med (0.116252)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               rec (0.17307)
               

               
               med (0.116252)

	281-639, gnl\|bosTau2\|chr9 (53932217-53932554)
	281-639, gnl\|Hg17\|chr6 (155671330-155670920)
	281-639, gnl\|Mm7\|chr17 (3519538-3519146)