Non-Coding RNA Search

Ss1.1-rmed20c_a5.5

Sequence:


               
               ACGGGACATGGTACCTCCGAGTAACCCTGGATGTGGCAGCTGGGGAGGCAACCGGTCTGA
GTTGCCGGGTGAAGCACAGCAGCCTAGGAGGCCATGATATCATCCTCTACTGGGGTGAGA
AAGAACTGGGGCCCAGCTGGGGAGAGGATAGTCTTCCTGCAGTCCAAGGAAGCCTTACTC
AAGGGCTAGAGAGTGAGGAGCTAGGCAAATGGCTGGGAAGGCTATGCCCTAGAGGATAAA
GGTGGGGAAATCCAAATAAAAAAGGATGGAGAATGACAGCAGTTAAATTTCAAGAAAATG
CAAGGAGGGAATTAGAGGTACTAAAGAGAAAAGAAAGATGACCTAGTGATTCGGTGAAAG
AGAGAGGGAGGGAGAAGGCCAGAGGCATAGAATCAGGAGGAATTGAAATGAGGGCTCTAG
AAAATACGGATGAAAACTCCAGGGAGGTCCTCCTGTGAAATGAGGAGCACTAACTGTGGT
AGACTAGAGAGTACTTTACAGATCAACTTCCTTATTTTATCCCCAACTAGGTGGAATCTC
CATTGTCCCGACATTGATCTGTTTGATGGTAGTAGTTACCCTGGTCCTGCTCGTTGTAGT
TGATTCATTGTTTAAGAAGCAGCGTAAGTCATTTCTTGCAGCATTTCTTCAACTTCTTAT
CAACACATTCTTCTTTCCTCCATTTTCTTTTTCCTTCCCCTTTCTCTCTGATTTTCCTTA
TTTGAAATCAAGGTCCTCTTCTTCCCCCTCAGCGCAAATTGGAACGTCCTCTCTGCTCAT
GTCGCCCACAATGACTTTCCCACTGGAGCTGACACCCAAGACCCCAGGAACTCAGGACCT
CAGCTCTGCTTGGCACAAGATTTGTGGATCAAAGACAGACTCTTAGAGAAATGGAAAACC
AGCCTAAATCAACTCTGGCGTCGTTAGTTTTAATGTCCACATAAAATCCTTTTCTTCTTC
TGTTTACACATGGTTCAAACCTATAAACAAAGCGTGATTTTGTTAAAGCAGCTTGTTCTG
GAAGAGATCCTGACCCCTTGGGAAATCTGTTTTCTTTTTTTTTTTCTCCACATATTCATC
ATTATTGATCCTTCAAACTTGAATTCAGATGCTTCTTTTCTTTTTTTTTTGATGAATCTT
ATTTTATTTTCCATCCAGTTTTATATTTGCAAGATGTATTCATGTTGTAATATTTAGTTT
TTGTAGGTACAATGTAGGTACAATGAAATACAGTGAAAACAATTAAAATGAATGAGCTAG
TTTAATCACTTATAAATAGCACAGCTGCAGACAAAGTAAAGAAAATGTACAGGGCTGTTC
AGTTCACTTATGTATTAAATTTGGCAGCTAGACAAGACAAAGCATAATAATTCTAGAGCT
GAAGATATTTGCTCTGTTCATGACCCTGACATATACAGGAAGAAAAACTGAAGCATAGTT
GGGGAAATATTCAGCTTCTTCTTCTTCTTCTTTTTTTTTTGGTCCAGGAGAAAAAAAAAA
TTAGCTTTCTAGAATAGGAAGTAGTTAGAAGGTCACAGTGGTTAGAAAGCCATAGCACCT
GGGTGCGCAGAAAAACCAGACTCTCTTGGGTGAGAAGAGACCCAGAGAGCCTTTCCAGTG
GTCTGGCCAGTTGTGCAAAAGAAATACATGGTAAAGTTACCGGGAAAGAGCCCTGCACAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACGGGACATGGTACCTCCGAGTAACCCTGGATGTGGCAGCTGGGGAGGCAACCGGTCTGA
GTTGCCGGGTGAAGCACAGCAGCCTAGGAGGCCATGATATCATCCTCTACTGGGGTGAGA
AAGAACTGGGGCCCAGCTGGGGAGAGGATAGTCTTCCTGCAGTCCAAGGAAGCCTTACTC
AAGGGCTAGAGAGTGAGGAGCTAGGCAAATGGCTGGGAAGGCTATGCCCTAGAGGATAAA
GGTGGGGAAATCCAAATAAAAAAGGATGGAGAATGACAGCAGTTAAATTTCAAGAAAATG
CAAGGAGGGAATTAGAGGTACTAAAGAGAAAAGAAAGATGACCTAGTGATTCGGTGAAAG
AGAGAGGGAGGGAGAAGGCCAGAGGCATAGAATCAGGAGGAATTGAAATGAGGGCTCTAG
AAAATACGGATGAAAACTCCAGGGAGGTCCTCCTGTGAAATGAGGAGCACTAACTGTGGT
AGACTAGAGAGTACTTTACAGATCAACTTCCTTATTTTATCCCCAACTAGGTGGAATCTC
CATTGTCCCGACATTGATCTGTTTGATGGTAGTAGTTACCCTGGTCCTGCTCGTTGTAGT
TGATTCATTGTTTAAGAAGCAGCGTAAGTCATTTCTTGCAGCATTTCTTCAACTTCTTAT
CAACACATTCTTCTTTCCTCCATTTTCTTTTTCCTTCCCCTTTCTCTCTGATTTTCCTTA
TTTGAAATCAAGGTCCTCTTCTTCCCCCTCAGCGCAAATTGGAACGTCCTCTCTGCTCAT
GTCGCCCACAATGACTTTCCCACTGGAGCTGACACCCAAGACCCCAGGAACTCAGGACCT
CAGCTCTGCTTGGCACAAGATTTGTGGATCAAAGACAGACTCTTAGAGAAATGGAAAACC
AGCCTAAATCAACTCTGGCGTCGTTAGTTTTAATGTCCACATAAAATCCTTTTCTTCTTC
TGTTTACACATGGTTCAAACCTATAAACAAAGCGTGATTTTGTTAAAGCAGCTTGTTCTG
GAAGAGATCCTGACCCCTTGGGAAATCTGTTTTCTTTTTTTTTTTCTCCACATATTCATC
ATTATTGATCCTTCAAACTTGAATTCAGATGCTTCTTTTCTTTTTTTTTTGATGAATCTT
ATTTTATTTTCCATCCAGTTTTATATTTGCAAGATGTATTCATGTTGTAATATTTAGTTT
TTGTAGGTACAATGTAGGTACAATGAAATACAGTGAAAACAATTAAAATGAATGAGCTAG
TTTAATCACTTATAAATAGCACAGCTGCAGACAAAGTAAAGAAAATGTACAGGGCTGTTC
AGTTCACTTATGTATTAAATTTGGCAGCTAGACAAGACAAAGCATAATAATTCTAGAGCT
GAAGATATTTGCTCTGTTCATGACCCTGACATATACAGGAAGAAAAACTGAAGCATAGTT
GGGGAAATATTCAGCTTCTTCTTCTTCTTCTTTTTTTTTTGGTCCAGGAGAAAAAAAAAA
TTAGCTTTCTAGAATAGGAAGTAGTTAGAAGGTCACAGTGGTTAGAAAGCCATAGCACCT
GGGTGCGCAGAAAAACCAGACTCTCTTGGGTGAGAAGAGACCCAGAGAGCCTTTCCAGTG
GTCTGGCCAGTTGTGCAAAAGAAATACATGGTAAAGTTACCGGGAAAGAGCCCTGCACAC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               29-148, + strand, RNAz p=0.919261

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               29-148, + strand, RNAz p=0.919261

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               5-148, gnl|bosTau2|chr3 (9757698-9757555)
               

               
               5-148, gnl|canFam2|chr38 (26308937-26308788)
               

               
               5-148, gnl|dasNov1|scaffold_232584 (727-578)
               

               
               5-148, gnl|echTel1|scaffold_105439 (1033-884)
               

               
               5-148, gnl|hg17|chr1 (154965855-154966004)
               

               
               5-148, gnl|Hg17|chr1 (154965910-154966053)
               

               
               5-148, gnl|loxAfr1|scaffold_39799 (13754-13603)
               

               
               5-148, gnl|mm7|chr3 (87110356-87110207)
               

               
               5-148, gnl|Mm7|chr3 (87110299-87110155)
               

               
               5-148, gnl|monDom2|scaffold_13 (64140339-64140190)
               

               
               5-148, gnl|oryCun1|scaffold_214440 (61769-61620)
               

               
               5-148, gnl|panTro1|chr1 (137019067-137019216)
               

               
               5-148, gnl|rheMac2|chr1 (136757343-136757492)
               

               
               5-148, gnl|rn3|chr2 (178962971-178962822)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-148, gnl|bosTau2|chr3 (9757698-9757555)
               

               
               5-148, gnl|canFam2|chr38 (26308937-26308788)
               

               
               5-148, gnl|dasNov1|scaffold_232584 (727-578)
               

               
               5-148, gnl|echTel1|scaffold_105439 (1033-884)
               

               
               5-148, gnl|hg17|chr1 (154965855-154966004)
               

               
               5-148, gnl|Hg17|chr1 (154965910-154966053)
               

               
               5-148, gnl|loxAfr1|scaffold_39799 (13754-13603)
               

               
               5-148, gnl|mm7|chr3 (87110356-87110207)
               

               
               5-148, gnl|Mm7|chr3 (87110299-87110155)
               

               
               5-148, gnl|monDom2|scaffold_13 (64140339-64140190)
               

               
               5-148, gnl|oryCun1|scaffold_214440 (61769-61620)
               

               
               5-148, gnl|panTro1|chr1 (137019067-137019216)
               

               
               5-148, gnl|rheMac2|chr1 (136757343-136757492)
               

               
               5-148, gnl|rn3|chr2 (178962971-178962822)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               med (0.348756)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               med (0.348756)

	5-148, gnl\|bosTau2\|chr3 (9757698-9757555)
	5-148, gnl\|canFam2\|chr38 (26308937-26308788)
	5-148, gnl\|dasNov1\|scaffold_232584 (727-578)
	5-148, gnl\|echTel1\|scaffold_105439 (1033-884)
	5-148, gnl\|hg17\|chr1 (154965855-154966004)
	5-148, gnl\|Hg17\|chr1 (154965910-154966053)
	5-148, gnl\|loxAfr1\|scaffold_39799 (13754-13603)
	5-148, gnl\|mm7\|chr3 (87110356-87110207)
	5-148, gnl\|Mm7\|chr3 (87110299-87110155)
	5-148, gnl\|monDom2\|scaffold_13 (64140339-64140190)
	5-148, gnl\|oryCun1\|scaffold_214440 (61769-61620)
	5-148, gnl\|panTro1\|chr1 (137019067-137019216)
	5-148, gnl\|rheMac2\|chr1 (136757343-136757492)
	5-148, gnl\|rn3\|chr2 (178962971-178962822)