Non-Coding RNA Search

Ss1.1-rmed20c_j12.5

Sequence:


               
               AGCTCAGGGGTCGTGGCTGGGGTCAACAGGATGGTCCAGGTCCCCCCTCAGAACACAGAT
GGCCAGCTGAGGCCGAGGCCTCTCCCGGCAGGGCGACGAGCCGTGTCTGTGCATGAGGAC
CAGCTCCAGGCCCCTGTTGAACGGCCCCTGCGGCTGCAGCGCTCCCCTGTTCTCAAGCGC
AGACCAAAGCTTGAGACACCTCCATCTCCAAGCGTAGGATCTGGCCTTGGAGCCGAGCCT
CTGCTCCCACAGACTTCAGAGCCCTCCAGCCCTGAGCAGAGCCCACCTTCCCCAGCCACA
GACCAAAGAGGCGGCGGCCCCAACCCCTGACCTTCTTTTCCTGCCGCATGAGATTATTTT
ATTAAAAAACTCAAAGAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCTCAGGGGTCGTGGCTGGGGTCAACAGGATGGTCCAGGTCCCCCCTCAGAACACAGAT
GGCCAGCTGAGGCCGAGGCCTCTCCCGGCAGGGCGACGAGCCGTGTCTGTGCATGAGGAC
CAGCTCCAGGCCCCTGTTGAACGGCCCCTGCGGCTGCAGCGCTCCCCTGTTCTCAAGCGC
AGACCAAAGCTTGAGACACCTCCATCTCCAAGCGTAGGATCTGGCCTTGGAGCCGAGCCT
CTGCTCCCACAGACTTCAGAGCCCTCCAGCCCTGAGCAGAGCCCACCTTCCCCAGCCACA
GACCAAAGAGGCGGCGGCCCCAACCCCTGACCTTCTTTTCCTGCCGCATGAGATTATTTT
ATTAAAAAACTCAAAGAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               51-386, gnl|bosTau2|chr1 (18802919-18803243)
               

               
               51-386, gnl|Hg17|chr16 (66248042-66248978)
               

               
               51-386, gnl|Mm7|chr8 (104296218-104296982)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               51-386, gnl|bosTau2|chr1 (18802919-18803243)
               

               
               51-386, gnl|Hg17|chr16 (66248042-66248978)
               

               
               51-386, gnl|Mm7|chr8 (104296218-104296982)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

Help | Less info


               
               csp (0.322373)
               

               
               fty (0.17584)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               med (0.116252)
               

               
               nbm (0.0993246)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csp (0.322373)
               

               
               fty (0.17584)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               med (0.116252)
               

               
               nbm (0.0993246)

	51-386, gnl\|bosTau2\|chr1 (18802919-18803243)
	51-386, gnl\|Hg17\|chr16 (66248042-66248978)
	51-386, gnl\|Mm7\|chr8 (104296218-104296982)

	csp (0.322373)
	fty (0.17584)
	hyp (0.142837)
	lnt (0.142308)
	med (0.116252)
	nbm (0.0993246)