Non-Coding RNA Search

Ss1.1-rmed20c_k15.5

Sequence:


               
               AGGCTGTATTTTGCTTCGAAAGTGTTGACACCCTATTGTTACACCATAGATGTGGAGATT
AAATTAGATGAAGACGGATTTGTGTTACCGTTTACGGCCGATGAAGATGTGCATAGAAGG
GTAGCACTGTGCATCAATGGGCCCAGAAGGTTTTGTTTGAGCAGCAAACACTTGCTGGGC
AAGGAAGCCACTAAACAAAGACACCTGCACTTACTTGGCTATCAGGTTGTTCAGATTCCC
TATTACGAGATCGAGATGCTAAAATCAAGGCTTGAATTAGTGGAATATTTACAAAGAAAA
CTATTTTCTCAAAACCCTGGTAGTCACTGGTATCAAGAATGAATACTGGCTTCAGATCTC
AAATACTGAAAGAACGTGCAAAGGAGCCGTTTGTGTGTGGCCCGTGGCGACCACATGGAG
AGAGAGGGTCTCCAGTTTGCTTCTACCTTGTGTAGACTCATCAGCGGTGCATCTGAAATG
AATCTATGTCGTCTTTATTTAACACCTGTGCCACAGGTCCTTTTATACAGCAAACAGTCG
ATCCCGCGTACAATAAAGGAACGTACTAAGTCGTGTAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGCTGTATTTTGCTTCGAAAGTGTTGACACCCTATTGTTACACCATAGATGTGGAGATT
AAATTAGATGAAGACGGATTTGTGTTACCGTTTACGGCCGATGAAGATGTGCATAGAAGG
GTAGCACTGTGCATCAATGGGCCCAGAAGGTTTTGTTTGAGCAGCAAACACTTGCTGGGC
AAGGAAGCCACTAAACAAAGACACCTGCACTTACTTGGCTATCAGGTTGTTCAGATTCCC
TATTACGAGATCGAGATGCTAAAATCAAGGCTTGAATTAGTGGAATATTTACAAAGAAAA
CTATTTTCTCAAAACCCTGGTAGTCACTGGTATCAAGAATGAATACTGGCTTCAGATCTC
AAATACTGAAAGAACGTGCAAAGGAGCCGTTTGTGTGTGGCCCGTGGCGACCACATGGAG
AGAGAGGGTCTCCAGTTTGCTTCTACCTTGTGTAGACTCATCAGCGGTGCATCTGAAATG
AATCTATGTCGTCTTTATTTAACACCTGTGCCACAGGTCCTTTTATACAGCAAACAGTCG
ATCCCGCGTACAATAAAGGAACGTACTAAGTCGTGTAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|47178420|emb|CAG14341.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|47178420|emb|CAG14341.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               232-400, gnl|bosTau2|chr20 (38423465-38423633)
               

               
               232-400, gnl|Hg17|chr5 (7912655-7912501)
               

               
               232-400, gnl|Mm7|chr13 (65501698-65501900)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               232-400, gnl|bosTau2|chr20 (38423465-38423633)
               

               
               232-400, gnl|Hg17|chr5 (7912655-7912501)
               

               
               232-400, gnl|Mm7|chr13 (65501698-65501900)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               fce (0.271592)
               

               
               med (0.116252)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               med (0.116252)

	232-400, gnl\|bosTau2\|chr20 (38423465-38423633)
	232-400, gnl\|Hg17\|chr5 (7912655-7912501)
	232-400, gnl\|Mm7\|chr13 (65501698-65501900)