Non-Coding RNA Search

Ss1.1-rmed21c_b3.5

Sequence:


               
               CAGGGAGGGGAGGGGAGGGTGGGGTGAGACCTGGGTTATACCAAGGGTTGTACCAGCAAA
GAGAACTACCTCAGGGCTTACCATCTGGACTAGTCGTGAGGGGCAGAGTGCATTGTTTGC
TCTAAGGTTTTATTCCTCTCACCTTCTAAATTGTTAGCTCACAGCCATATAGGAATGGAC
TGGGGCTGGTGCTTACTCTCGGTCTGATTTGTGAGTGCCCCCCGGGTCTGACCTTAAGGG
CAAGGGCAGGGAACTTCACATTTCAAATGCAGTAGTGGTTATGACAGCCCAGTCCTTTTG
GCCCTCCTTGCAGTTCATTTGTCCTCCCTTCTCCCAACCTTTCTCACTGGTGTTGCTGGG
TGTGGTACTTGGCACAGAATAGCCTTGGGCCTGTGTGGCCAGACTTCTGACCCCTTGGGC
AAAAGCCAGATAGAGACTGATTGCCTTTTGAGCCTCAGCTCTCTTCCTCTTGTTCTCCTA
GGGTGGGAATATAGCAGCCACACGCTGAATTTTGTCCCATCCACTTCCATCTTATCCTTT
GTGCCCTTCATCCCCCTGCATCTTGTCCTTTTTGCCCTCTGGTACCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGGGAGGGGAGGGGAGGGTGGGGTGAGACCTGGGTTATACCAAGGGTTGTACCAGCAAA
GAGAACTACCTCAGGGCTTACCATCTGGACTAGTCGTGAGGGGCAGAGTGCATTGTTTGC
TCTAAGGTTTTATTCCTCTCACCTTCTAAATTGTTAGCTCACAGCCATATAGGAATGGAC
TGGGGCTGGTGCTTACTCTCGGTCTGATTTGTGAGTGCCCCCCGGGTCTGACCTTAAGGG
CAAGGGCAGGGAACTTCACATTTCAAATGCAGTAGTGGTTATGACAGCCCAGTCCTTTTG
GCCCTCCTTGCAGTTCATTTGTCCTCCCTTCTCCCAACCTTTCTCACTGGTGTTGCTGGG
TGTGGTACTTGGCACAGAATAGCCTTGGGCCTGTGTGGCCAGACTTCTGACCCCTTGGGC
AAAAGCCAGATAGAGACTGATTGCCTTTTGAGCCTCAGCTCTCTTCCTCTTGTTCTCCTA
GGGTGGGAATATAGCAGCCACACGCTGAATTTTGTCCCATCCACTTCCATCTTATCCTTT
GTGCCCTTCATCCCCCTGCATCTTGTCCTTTTTGCCCTCTGGTACCTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               381-588, - strand, RNAz p=0.98171

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               381-588, - strand, RNAz p=0.98171

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               428-516, + strand, RNAmicro p=0.981713

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               428-516, + strand, RNAmicro p=0.981713

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-588, gnl|bosTau2|chr21 (34520749-34521330)
               

               
               1-588, gnl|Hg17|chr15 (41872581-41873172)
               

               
               1-588, gnl|Mm7|chr2 (121190940-121191542)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-588, gnl|bosTau2|chr21 (34520749-34521330)
               

               
               1-588, gnl|Hg17|chr15 (41872581-41873172)
               

               
               1-588, gnl|Mm7|chr2 (121190940-121191542)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nca (0.136874)
               

               
               med (0.116252)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nca (0.136874)
               

               
               med (0.116252)

	1-588, gnl\|bosTau2\|chr21 (34520749-34521330)
	1-588, gnl\|Hg17\|chr15 (41872581-41873172)
	1-588, gnl\|Mm7\|chr2 (121190940-121191542)