Non-Coding RNA Search

Ss1.1-rmed21c_j20.5

Sequence:


               
               GGCAGAAGCTCTCATGCTGGTCATGGAGATGGCAGGTGCCGGGCCCCTGCACAAGTTCCT
GGTCGGGAAGAAGGAGGAGATCCCTGTCAGCAACGTGGCGGAGCTGCTGCACCAGGTGTC
CATGGGGATGAAGTACCTGGAGGAGAAGAACTTTGTGCACCGTGACCTGGCGGCCCGCAA
CGTCCTGCTGGTCAACCGGCACTATGCCAAGATCAGCGACTTTGGTCTCTCCAAGGCACT
GGGTGCCGATGACAGCTACTACACTGCCCGCTCAGCAGGGAAGTGGCCGCTCAAGTGGTA
CGCGCCTGAGTGCATCAACTTCCGCAAGTTCTCCAGCCGCAGTGATGTCTGGAGCTATGG
GGTCACCATGTGGGAGGCCTTCTCTTATGGCCAGAAGCCCTACAAGAAGATGAAGGGCCC
CGAGGTCATGGCCTTCATTGAGCAGGGCAAGCGGATGGAGTGCCCACCAGAGTGTCCACC
TGAAATGTACACACTCATGAGCGACTGCTGGACCTACAAGTGGGAGGAGCGTCCAGACTT
CCAAATCGTGGAACAGCGCATGCGCACCTACTACTACAGCTTGGCGACTAAGGCCGAGGA
CGCTGCAGCTGAGGGGAAGGAGGCCGCCTGTGCCTGAGCTCCAGCCTGAGGCCTGTATCC
CCCAGTTTCTCCTCCTGTGCCCACAGCTCCTTCCTGGGACCTCAGTCCGGCCGGGCTCAG
CTCAGTTTCTCTCCCCCCACCAGCTGGACTGTGGTAAGGGGGACAGGCCTGAGGCCCACA
CTGGTCTAGGAGTCCCCACCCGGTCACTTGTCCTCTCTGGCTGGGGGAAGGAGGACAGCA
GGGAGGGTGGGCCTGGGCTGAAGGGATGTTGCTCACAACAAGGACCCTTTTTCCTATGGG
CCCTGAAGGGCAGACTTTGGGGGTCCTCAGGGGGCAAGACCTCAGTCATTGGAATAAACT
CAACTTCTCTCTTGAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCAGAAGCTCTCATGCTGGTCATGGAGATGGCAGGTGCCGGGCCCCTGCACAAGTTCCT
GGTCGGGAAGAAGGAGGAGATCCCTGTCAGCAACGTGGCGGAGCTGCTGCACCAGGTGTC
CATGGGGATGAAGTACCTGGAGGAGAAGAACTTTGTGCACCGTGACCTGGCGGCCCGCAA
CGTCCTGCTGGTCAACCGGCACTATGCCAAGATCAGCGACTTTGGTCTCTCCAAGGCACT
GGGTGCCGATGACAGCTACTACACTGCCCGCTCAGCAGGGAAGTGGCCGCTCAAGTGGTA
CGCGCCTGAGTGCATCAACTTCCGCAAGTTCTCCAGCCGCAGTGATGTCTGGAGCTATGG
GGTCACCATGTGGGAGGCCTTCTCTTATGGCCAGAAGCCCTACAAGAAGATGAAGGGCCC
CGAGGTCATGGCCTTCATTGAGCAGGGCAAGCGGATGGAGTGCCCACCAGAGTGTCCACC
TGAAATGTACACACTCATGAGCGACTGCTGGACCTACAAGTGGGAGGAGCGTCCAGACTT
CCAAATCGTGGAACAGCGCATGCGCACCTACTACTACAGCTTGGCGACTAAGGCCGAGGA
CGCTGCAGCTGAGGGGAAGGAGGCCGCCTGTGCCTGAGCTCCAGCCTGAGGCCTGTATCC
CCCAGTTTCTCCTCCTGTGCCCACAGCTCCTTCCTGGGACCTCAGTCCGGCCGGGCTCAG
CTCAGTTTCTCTCCCCCCACCAGCTGGACTGTGGTAAGGGGGACAGGCCTGAGGCCCACA
CTGGTCTAGGAGTCCCCACCCGGTCACTTGTCCTCTCTGGCTGGGGGAAGGAGGACAGCA
GGGAGGGTGGGCCTGGGCTGAAGGGATGTTGCTCACAACAAGGACCCTTTTTCCTATGGG
CCCTGAAGGGCAGACTTTGGGGGTCCTCAGGGGGCAAGACCTCAGTCATTGGAATAAACT
CAACTTCTCTCTTGAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|26453338|dbj|BAC43746.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|26453338|dbj|BAC43746.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               629-735, - strand, RNAz p=0.995171

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               629-735, - strand, RNAz p=0.995171

Aligned organism(s): 8 entry(ies)

More info

Aligned organism(s): 8 entry(ies)

Help | Less info


               
               73-264, gnl|bosTau2|chr11 (3189839-3189648)
               

               
               73-264, gnl|Hg17|chr2 (97812454-97812645)
               

               
               73-264, gnl|Mm7|chr1 (37022218-37022409)
               


               
               266-406, gnl|bosTau2|chr11 (3189557-3189417)
               

               
               266-406, gnl|Hg17|chr2 (97812738-97812878)
               

               
               266-406, gnl|Mm7|chr1 (37022500-37022640)
               


               
               516-974, gnl|bosTau2|chr11 (3184703-3184240)
               

               
               516-974, gnl|Hg17|chr2 (97814352-97814841)

Aligned organism(s): 8 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               73-264, gnl|bosTau2|chr11 (3189839-3189648)
               

               
               73-264, gnl|Hg17|chr2 (97812454-97812645)
               

               
               73-264, gnl|Mm7|chr1 (37022218-37022409)
               


               
               266-406, gnl|bosTau2|chr11 (3189557-3189417)
               

               
               266-406, gnl|Hg17|chr2 (97812738-97812878)
               

               
               266-406, gnl|Mm7|chr1 (37022500-37022640)
               


               
               516-974, gnl|bosTau2|chr11 (3184703-3184240)
               

               
               516-974, gnl|Hg17|chr2 (97814352-97814841)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

Help | Less info


               
               med (0.348756)
               

               
               ill (0.175593)
               

               
               cli (0.152812)
               

               
               cag (0.151194)
               

               
               lnt (0.142308)
               

               
               cly (0.120642)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               med (0.348756)
               

               
               ill (0.175593)
               

               
               cli (0.152812)
               

               
               cag (0.151194)
               

               
               lnt (0.142308)
               

               
               cly (0.120642)

	73-264, gnl\|bosTau2\|chr11 (3189839-3189648)
	73-264, gnl\|Hg17\|chr2 (97812454-97812645)
	73-264, gnl\|Mm7\|chr1 (37022218-37022409)

	266-406, gnl\|bosTau2\|chr11 (3189557-3189417)
	266-406, gnl\|Hg17\|chr2 (97812738-97812878)
	266-406, gnl\|Mm7\|chr1 (37022500-37022640)

	516-974, gnl\|bosTau2\|chr11 (3184703-3184240)
	516-974, gnl\|Hg17\|chr2 (97814352-97814841)

	med (0.348756)
	ill (0.175593)
	cli (0.152812)
	cag (0.151194)
	lnt (0.142308)
	cly (0.120642)