Non-Coding RNA Search

Ss1.1-rmed21c_l1.5

Sequence:


               
               CTCCAGCCAAAGTGGAACAGAGTGAGAAGGAGAGCGACACAACCAGAGGGCTCGGTGGGA
AAGCGCAGAGAACCATAAAGAATATGCTGCTGTTGGGACCCAAAGTGCTGCTGGTGCTCA
CTGCCCTCATCATCCCCTCTGGTTGGACACCCCTAGGGGTCAGTGGTCAACGAGGAGATG
ATGTGACTCCAGTAATTCTAGAAACATTCACGGAAGACCCTAATCTGGTCGATGAACCTG
CTACAGATGAAACAGTTCTGGCCGATATGGAACCTTCCACAGATGACCTGGCCTCGCTCA
GTGATAAAAATACCACAGAGTGCCGAGATGAGAAATTCGCTTGCACAAGACTCTACTCCG
TGCATCGGCCAGTCAAGCAATGCATCCATCAGTCATGCTTCACCAGTTTACGGCGCATGT
ACATCATCAACAATGAGATCTGCTCCCGTCTTGTCTGTAAAGAACATGAAGCTATGAAAG
ATGAGCTTTGCCGACAGATGGCTGGTCTACCGCCAAGGCGACTCCGCCGCTCCAACTACT
TCCGCCTTCCTCCCTGTGAAAATGGGAATTTGCAGAGCCCCCGTGGCCTGTGATCATCAA
GGAAGAGGAAACGAAGAAAGTGTGGGTGGGAGGGAGAGGATGCTCCAGGAAGAGGGAAGC
ATGGTCAGCCAACCCACAGACATTCGCACTTCTTAAACCGATCCCTTGGCAATGTCTAGC
TTTGGCCCCTACTTGATTTTTCACCAATTTATCTCATTTTTCAGTACTTAAAATACAGTC
TATATTATTGCATGGTTTTGCTGCTTCCCAATATCATAGACCTAGTAAGATAAATGACGA
CCGAGTGGCTTACGTACAAACATTCTACATACAATTTTGAGAAAATAAATAAAAATATTA
TTAAAAATAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCCAGCCAAAGTGGAACAGAGTGAGAAGGAGAGCGACACAACCAGAGGGCTCGGTGGGA
AAGCGCAGAGAACCATAAAGAATATGCTGCTGTTGGGACCCAAAGTGCTGCTGGTGCTCA
CTGCCCTCATCATCCCCTCTGGTTGGACACCCCTAGGGGTCAGTGGTCAACGAGGAGATG
ATGTGACTCCAGTAATTCTAGAAACATTCACGGAAGACCCTAATCTGGTCGATGAACCTG
CTACAGATGAAACAGTTCTGGCCGATATGGAACCTTCCACAGATGACCTGGCCTCGCTCA
GTGATAAAAATACCACAGAGTGCCGAGATGAGAAATTCGCTTGCACAAGACTCTACTCCG
TGCATCGGCCAGTCAAGCAATGCATCCATCAGTCATGCTTCACCAGTTTACGGCGCATGT
ACATCATCAACAATGAGATCTGCTCCCGTCTTGTCTGTAAAGAACATGAAGCTATGAAAG
ATGAGCTTTGCCGACAGATGGCTGGTCTACCGCCAAGGCGACTCCGCCGCTCCAACTACT
TCCGCCTTCCTCCCTGTGAAAATGGGAATTTGCAGAGCCCCCGTGGCCTGTGATCATCAA
GGAAGAGGAAACGAAGAAAGTGTGGGTGGGAGGGAGAGGATGCTCCAGGAAGAGGGAAGC
ATGGTCAGCCAACCCACAGACATTCGCACTTCTTAAACCGATCCCTTGGCAATGTCTAGC
TTTGGCCCCTACTTGATTTTTCACCAATTTATCTCATTTTTCAGTACTTAAAATACAGTC
TATATTATTGCATGGTTTTGCTGCTTCCCAATATCATAGACCTAGTAAGATAAATGACGA
CCGAGTGGCTTACGTACAAACATTCTACATACAATTTTGAGAAAATAAATAAAAATATTA
TTAAAAATAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|57106526|ref|XP_534895.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57106526|ref|XP_534895.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               479-909, gnl|bosTau2|chr5 (59755979-59756413)
               

               
               479-909, gnl|Hg17|chr12 (8692068-8691626)
               

               
               479-909, gnl|Mm7|chr6 (122565138-122565519)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               479-909, gnl|bosTau2|chr5 (59755979-59756413)
               

               
               479-909, gnl|Hg17|chr12 (8692068-8691626)
               

               
               479-909, gnl|Mm7|chr6 (122565138-122565519)

Expressed library(ies): 25 entry(ies)

More info

Expressed library(ies): 25 entry(ies)

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               jca (1.1396)
               

               
               fat (0.737137)
               

               
               nep (0.7357)
               

               
               aor (0.585823)
               

               
               mas (0.42061)
               

               
               hlv (0.417769)
               

               
               ssp (0.406559)
               

               
               ton (0.351)
               

               
               med (0.348756)
               

               
               ese (0.253004)
               

               
               bla (0.248694)
               

               
               tra (0.246184)
               

               
               hea (0.204499)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               cut (0.169924)
               

               
               nje (0.16592)
               

               
               tbr (0.154178)
               

               
               csk (0.140746)
               

               
               ste (0.135208)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               spc (0.113366)
               

               
               ldo (0.0970026)

Expressed library(ies): 25 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jca (1.1396)
               

               
               fat (0.737137)
               

               
               nep (0.7357)
               

               
               aor (0.585823)
               

               
               mas (0.42061)
               

               
               hlv (0.417769)
               

               
               ssp (0.406559)
               

               
               ton (0.351)
               

               
               med (0.348756)
               

               
               ese (0.253004)
               

               
               bla (0.248694)
               

               
               tra (0.246184)
               

               
               hea (0.204499)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               cut (0.169924)
               

               
               nje (0.16592)
               

               
               tbr (0.154178)
               

               
               csk (0.140746)
               

               
               ste (0.135208)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               spc (0.113366)
               

               
               ldo (0.0970026)

	479-909, gnl\|bosTau2\|chr5 (59755979-59756413)
	479-909, gnl\|Hg17\|chr12 (8692068-8691626)
	479-909, gnl\|Mm7\|chr6 (122565138-122565519)

	jca (1.1396)
	fat (0.737137)
	nep (0.7357)
	aor (0.585823)
	mas (0.42061)
	hlv (0.417769)
	ssp (0.406559)
	ton (0.351)
	med (0.348756)
	ese (0.253004)
	bla (0.248694)
	tra (0.246184)
	hea (0.204499)
	rec (0.17307)
	eye (0.170503)
	cut (0.169924)
	nje (0.16592)
	tbr (0.154178)
	csk (0.140746)
	ste (0.135208)
	eep (0.122564)
	cly (0.120642)
	eru (0.120048)
	spc (0.113366)
	ldo (0.0970026)